Extract bubbles in pangenome graph
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18 days ago
polag01 ▴ 10

Sorry if this has been answered somewhere (although I have searched but found no similar post) or directed to the wrong channel.

I created a pangenome graph using PGGB and would like to extract the regions with bubbles for further analysis. I tried using {gfatools bubble file.gfa} but the command returned an empty file. Is there a different approach or tool to carry out this task?

Thank you in advance.

graph pangenome bubble gfa • 249 views
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11 days ago
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