How plot multiple enrichment plot together

Question

[synat.keam]

Dear all,

I am wondering whether you are familiar with Gene Set Enrichment and know how to plot the enriched pathways in a single plot together. You can help review the link

https://crazyhottommy.github.io/scRNA-seq-workshop-Fall-2019/scRNAseq_workshop_3.html

I have deg from two groups of single cell seurat and would like to perform gene set enrichment and plots all upregulated pathways together in a single plots rather than splitting them into several plots.

I have attached the enrichment plot here. Hope you could help!

Kind Regards,

synat

Answer 1

[dthorbur]

The plotEnrichment function is just a ggplot2 wrapper. See source code here. If you are competent in R and ggplot2, you can adapt their code or write your own. Regardless, I suggest giving it a go and if you get stuck, make another post with what you've tried and why you think you're getting stuck.