Error when i use EVidenceModeler to do the genome annotation

Question

[peanut]

Dear all, When i use EVidenceModeler to do the genome annotation,it get the error:

---

successfully changed directories to acu.partitions/GWHBGBO00000001/GWHBGBO00000001_10890001-10990000

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)-WARNING, skipping predType: Augustus, since not specified in weights file.
-WARNING, skipping predType: Augustus, since not specified in weights file.
-WARNING, skipping predType: Augustus, since not specified in weights file.
-WARNING, skipping predType: Augustus, since not specified in weights file.
-WARNING, skipping predType: Augustus, since not specified in weights file.
-WARNING, skipping predType: Augustus, since not specified in weights file.
-WARNING, skipping predType: GeneMark.hmm3, since not specified in weights file.
-WARNING, skipping predType: GeneMark.hmm3, since not specified in weights file.
-WARNING, skipping predType: GeneMark.hmm3, since not specified in weights file.
-WARNING, skipping predType: GeneMark.hmm3, since not specified in weights file.
-WARNING, skipping predType: GeneMark.hmm3, since not specified in weights file.

---

and the weights.txt is like that:

PROTEIN gth 4
TRANSCRIPT  transdecoder    8
ABINITIO_PREDICTION AUGUSTUS    1
ABINITIO_PREDICTION GeneMark.hmm    1

Can you help me ? Thank you a lot!!

Answer 1

[colindaven]

1. you got warnings, not errors
2. EVM is looking for Augustus, not AUGUSTUS - case matters probably
3. EVM is looking for GeneMark.hmm3 not GeneMark.hmm as you wrote.