Entering edit mode
19 months ago
roussine
▴
10
Hello all -
as I can see, the Convert function of SeuratDisk (from h5Seurat to h5ad) will never touch the counts dataset (not-normalised matrix) of the default assay (e.g., "RNA") in a h5Seurat object, as it gives priority to "scale.data" (variable features only) and then "data" (normalised matrix) when filling X.
Is there a way to force such conversion?..
Thanks a lot in advance for any help
Leo