Extracting information from gff3 file produced by augustus
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5 weeks ago
Jiang • 0

I have finished my Eukaryotic genome annotation using augustus. I have got the gff3 file. It seems that I need to extract information from the gff3 file for the downstream functional annotation. But I don't know how to do it in linux. Could anyone provide some suggestions?

augustus gff3 • 384 views
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you should be more specific as to what you are trying to do.

in general parsing a GFF file, while error prone and annoying it is reasonably straightforward,

look at your file with a text editor and identity what steps are you trying to achieve aka which field of which region should be extracted into what foramt

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