I'd like to visualize the gene body coverage and I wanted to use RSeqQC given that it's an established tool.
I downloaded the directory directly off the site (RSeQC-5.0.1) however it's failing for qcmodule import
from qcmodule import getBamFiles
ModuleNotFoundError: No module named 'qcmodule'
I'm confused because these import lines in the script are commented as #import my own modules
but there is no directory or script called qcmodule
in the entire downloaded directory that I can find with grep.
Would be greatful for any/all guidance for (1) how to get this package to work (2) alternate means to reliably visualize gene body coverage
thanks!
Take a look at this post ... it might give a clue.
Alternatively, for my installation the qcmodule is located at:
/home/bioinfguru/micromamba/envs/rseqc/lib/python3.8/site-packages/qcmodule
I install rseqc with micromamba and have never had any issues.