Bacterial genome alignment with mauve
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4 weeks ago
rthapa ▴ 90

I am aligning query genome against reference genome of bacteria. I reordered the contigs in mauve but still the Linear collinear blocks (LCBs) are not in the same genome position of query genome compared to reference genome. Is there a way to re-order the contigs in such a way that LCBs are in same genome position in both? For e.g green LCBs should be in same position in both, and same with other LCBs. enter image description here

Bacteria mauve genome • 166 views
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