FAM FILE
1
0
Entering edit mode
5 weeks ago
Eleonora • 0

I have to do an association study with Plink and I have to use a FAM file. I have tried many times but I always get the error that not all the individuals' IDs are present. I have built the file several times but I still have problems, how can I solve it?

file Fam • 188 views
ADD COMMENT
0
Entering edit mode
5 weeks ago
Eleonora • 0

I'm using these commands:

bcftools merge ... ... > MyVars.bcf

plink --noweb --bcf MyVars.bcf --keep-allele-order --indiv-sort file MySampleListing.list --vcf-idspace-to _ --const-fid --allow-extra-chr 0 --split-x b37 no-fail --make-bed --out MyVars ;

ADD COMMENT

Login before adding your answer.

Traffic: 1181 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6