Whether the hifiasm (hic) will filter unitig during the process from unitig to contig
0
0
Entering edit mode
15 months ago
2782887377 • 0

I used bwa mem to map hic data to p-utg files and did some filtering on the results. It was found that there were very few hic signals on some short unitigs. I know hifiasm is based on kmer to map hic data. So I would like to ask whether hifiasm will filter out unitig nodes with few hic signals in the process of generating conitg from unitig using hicOr do some filtering based on something like coverage.

hifiasm • 356 views
ADD COMMENT

Login before adding your answer.

Traffic: 3260 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6