Entering edit mode
14 months ago
akar_ozan01
•
0
So I wanted to download a GEO dataset that contains 36 runs and I just put the main SRA accession number in order to download all of it in one go. but prefetch command gave me this message (after that it contiuned to download sra files).
string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
I wonder what that message means exactly and is there any problem? I'm new to the field!. thanks for the any help.
Can you provide the command that you are using?
prefetch SRP095578
is the command I used.Use https://sra-explorer.info/ to get the download links for all samples at the same time. Post about how to use --> sra-explorer : find SRA and FastQ download URLs in a couple of clicks
yeah I think this way is a lot easier to get the SRR numbers (its working when I entered one by one in the same prefetch command).