Blast BRAKER output
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13 months ago
Tom Brady • 0

I ran BRAKER on my genome assembly, and got a .gtf file with all the genes, and a .aa file with all the protein sequences. I wanted to BLAST the proteins to add a gene_name field to the gtf with the actual gene symbols, but I'm not sure what uniprot database would be best to blast it against?

braker blast • 490 views
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Is there a proteome available for a close relative? Then it may be an option depending on how complete it is in UniProt. If you want to broaden the scope then one of the UniRef databases: https://www.uniprot.org/help/uniref

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