how to make a recombination map using a family of a diploid bee "mom" and 5 haploid "sons"

Question

[dovasuttner]

I'm trying to build a recombination map for different "families" of bees where the "mom" queen is diploid and her "sons" are haploid. I have fastq files for each bee, .bam files, individual vcf files and combined "family" vcf files that have been filtered. how can I create a recombination map that directly looks at the mom's genotypes and identified the locations of crossover using information from the haploid offspring. thanks!