Facing issue while running PHASTEST docker
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9 months ago
Himu22 ▴ 10

Hello,

I am trying to run PHASTEST docker in my system to detect prophage regions. I used the following command-

sudo docker-compose run phastest -i fasta -s seq_test_long.fna

While running, I am encountering the following message-

cp: cannot stat '/phastest-app/JOBS/seq_test_long/tmp/blast_v/seq_test_long.faa_blast_out': No such file or directory

I also checked the output file, and the summary.txt and detail.txt files are completely empty, meaning it could not function properly and could not detect any prophage region. Any idea/help to solve the issue would be highly appreciated.

phage prophage phastest docker • 917 views
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Did you figure it out? how to solve as i m also getting same error.

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