Manta <DUP:TANDEM> interpretation

Question

[bharata1803]

Hi,

I have this variant:

chr3    129573007   MantaDUP:TANDEM:238504:0:1:0:0:0    A   <DUP:TANDEM>    .   PASS    END=129701068;SVTYPE=DUP;SVLEN=128061;CIPOS=0,4;CIEND=0,4;HOMLEN=4;HOMSEQ=GGGA;SOMATIC;SOMATICSCORE=212 PR:SR   83,0:76,0   162,60:135,66

Can someone explain, what does this mean? What is the meaning of position field, and END field? Since this is duplication, is the interval from 129573007 to 129701068 actually duplicated?

[Pierre Lindenbaum]

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