Entering edit mode
4 months ago
venkatramananspd
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0
I designed a peptide to have possible antimicrobial properties. I designed a membrane using CHARMM GUI but can't keep the peptide at some distance (as mentioned in the research article). But with that, I performed dynamics in NAMD for 100 ns. But the analysis part is very difficult for me. I want to analyze further the simulation for possible antibacterial properties of AMP by their action on the membrane, such as RMSD changes, membrane thickness, pore formation, or any other that I don't know.
welcome to the forum venkatramananspd ,
unfortunately this kind of question phrasing will not get you much response.
Do put some effort in formulating your question with sufficient details and information. It is also appreciated to at least show that you have tried to get things done yourself. While we are here to help and assist, we're unfortunately not here to simply do your work.
much better, thanks :-)