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16 days ago
hang
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0
HI,I'm learning about tNGS(Targeted Next-Generation Sequencing) which is aimed to detect pathogenic microbes these days. I think that learning from a project is a good way to fully understand it.But I didn't find any complete project for me to study. Is there any experienced senior who can provide me with some reference process links or learning ideas? The focus can be on the analysis and processing of data in bioinformatics software.
From National Cancer Institute: https://docs.gdc.cancer.gov/Data/Bioinformatics_Pipelines/DNA_Seq_Variant_Calling_Pipeline/
While this pipeline is for human data the basic principles should be same for any other data.
Here is one set of bacterial samples to get you started: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=%20PRJEB23438%20&o=acc_s%3Aa