Obtain Common SNPS for Mouse Genome

Question

[joe_genome]

Hello,

I'm having difficulties obtaining common SNPs for the mouse genome. In human (hg38), this is quite more clear; however, for mouse, I can get the SNPS/indels from https://www.mousegenomes.org/snps-indels/. However, how would I be able to determine/extract common SNPs from these?

Can someone please help me with this?

[GenoMax]

These are multi-strain VCF's so you could look for SNP's common across the strains (see --> Shared variants ) . Keep in mind that mice used for research are inbred and thus allele frequencies key for human populations don't apply.