How to connect the UCSC when i get the DMR.plot?

Question

[Wren]

I've tried many approaches but still can't connect to the website to generate the methylation plot. What can I do?

---

> DMR.plot(ranges = results.ranges, dmr =2, CpGs = bVals, phen.col = cols, 
+          what ="Beta", arraytype ="450K", genome ="hg19")

Error in function (type, msg, asError = TRUE)  : 
  Failed to connect to genome-euro.ucsc.edu port 443 after 21057 ms: Couldn't connect to server

Answer 1

[GenoMax]

genome-euro.ucsc.edu is working fine. This sounds like a local firewall/ISP restriction that is preventing the connection. There is a also a lesser chance that UCSC is rejecting the connection based on IP of origin (some IP ranges may be blocked).

You could try using the main UCSC site (if the site above is coded in the program, you will need to change it) or use a different program to do the plotting locally.

[Wren]

I tried using the main site but it still didn't work. Thanks anyway, I'll try other methods.