Best way to map biological pathways to cancer hallmarks using PLMs (without building models)?
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12 hours ago
DEPANSHI • 0

Hi everyone,

I’m working on a project where I need to map biological pathways (from KEGG, Reactome, etc.) to the cancer hallmarks (Hanahan & Weinberg). I don’t have gene expression or omics data, and I’m not trying to build ML/DL models from scratch, but I’m open to using pretrained language models if there are existing workflows or tools that can help.

Are there tools or notebooks that use PLMs to compare text (e.g., pathway descriptions vs hallmark definitions) or something similiar?

I’m from a biology background and have some bioinformatics knowledge, so I’m looking for something I can plug into without deep ML coding.

Thanks for any tips or pointers!

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