hisat2 error-Paired end reads not equal or lack of RAM/disk space?
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9 hours ago
aj123 ▴ 130

41467051 SRR8571937_1.fastq.gz

41030872 SRR8571937_2.fastq.gz

My paired end reads are not equal. Please let me know if there is something I can do about this because Im getting the following errors from hisat2 and Im not sure if it is due to paired end reads not being equal or lack of RAM/disk space.

Error while flushing and closing output
libc++abi: terminating due to uncaught exception of type int
libc++abi: terminating due to uncaught exception of type int
(ERR): hisat2-align died with signal 6 (ABRT) '

I got the paired end reads from here-ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR857/008/SRR8571938/SRR8571938_1.fastq.gz

end fastq paired • 84 views
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How did you get to these un-synced files? aka, what was your previous step in this analysis?

I'm asking, as usually you need to make sure they are kept in sync in that step (adapter/quality trimming and alike steps)

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