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6 hours ago
CH
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Hi,
I have some questions about pyomadb. I am trying to get all the 1:1 orthologs of one protein through pyomadb.
from omadb import Client
C=Client()
orthologs_response = C.entries.orthologues("TNR4_HUMAN",rel_type="1:1")
My API query returns 81 orthologs, but when I check the same protein on the OMA website, it only lists 68.
This pattern is consistent across other proteins I've tested. I'm concerned I might be missing a crucial parameter in my API command. Could you help me identify what might be causing this discrepancy?
Compare the results from API with one from OMA site. It must be including some entries for which the relation type is not visibly set to
1:1.https://omabrowser.org/api/protein/TNR4_HUMAN/orthologs/?format=json appears to get 84.