Question: How To Query Snp Against Genomic Features In R
1
gravatar for Zhenyu Zhang
5.5 years ago by
Zhenyu Zhang260
United States
Zhenyu Zhang260 wrote:

Something like query SNP against, say, splicing junctions, or in general, overlapping ranges against genomic and epigenetic features.

I know to use GRanges, but want to know if there is other more convenient packages available there. Especially, tools to download and/or automatically build genomic feature database from ENCODE, UCSC, instead of manually assign GRanges objects like what I am doing now? Thanks.

genomic snp • 1.5k views
ADD COMMENTlink modified 5.5 years ago by Biostar ♦♦ 20 • written 5.5 years ago by Zhenyu Zhang260
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