Question: Haplotype Construction Using Phase Version 2.1
2
gravatar for oxon
5.0 years ago by
oxon20
United Kingdom
oxon20 wrote:

It would be great if someone can help with Haplotype construction using PHASE version 2.1. I have genotyped data in Plink format and not really sure how to convert it to PHASE version 2.1 INPUT format in easy way. Thanks.

haplotype • 2.7k views
ADD COMMENTlink written 5.0 years ago by oxon20
3

You can use plink for recoding plink format to fastPHASE by ''--recode-fastphase'' option in PLINK. It’s similar to PHASE input file format, you should just add S for SNP and M for microsatellite marker on 4th raw as locus type

ADD REPLYlink written 4.8 years ago by mary200

A good idea, but it seems multiallelic sites in vcf would be converted to missing alleles...

ADD REPLYlink written 4 months ago by shuaibing0
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 813 users visited in the last hour