Off topic:Extracting reads from multiple regions
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11.4 years ago
Ron ★ 1.2k

Hi,

I want to extract reads from bam file using Samtools view from multiple regions.The regions I have are present in the VCF file,which I want to use.So there are not a small number of regions.Is there any way to do this in Samtools view.

for e.g inputting a file in some format in Samtools view?

Thanks

samtools-view samtools • 9.2k views
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