Question

What Is Your Favorite Visualizer For Acgh Or Snp Microarray Data?

2

Entering edit mode

14.0 years ago

Barjaron ▴ 40

I am looking for ways to visualize copy number changes or whole region deletions of multiple samples side by side, with Cytoband and sample attributes Thanks burak

snp microarray visualization • 2.7k views

ADD COMMENT • link updated 14.0 years ago by Jan Oosting ▴ 920 • written 14.0 years ago by Barjaron ▴ 40

Ram · Answer 1 · 2010-05-06

3

Entering edit mode

14.0 years ago

Jan Oosting ▴ 920

Bioconductor beadarraySNP package

reportChromosomeGainLossLOH() function

ADD COMMENT • link updated 5.7 years ago by Ram 43k • written 14.0 years ago by Jan Oosting ▴ 920

score 1 · Answer 2 · 2010-05-06

1

Entering edit mode

14.0 years ago

Barjaron ▴ 40

IGV from the Broad Institute (http://www.broadinstitute.org/igv/) seems one of the options

ADD COMMENT • link 14.0 years ago by Barjaron ▴ 40