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Comment: Comment: How can I import an unindexed human gtf file in IGV?
10 weeks ago by bioinfo ▴ 150
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546
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Comment: Comment: Why am I getting such a big difference in alignment rates in kallisto?
3 months ago by bioinfo ▴ 150
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546
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Comment: Comment: Why am I getting such a big difference in alignment rates in kallisto?
3 months ago by bioinfo ▴ 150
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546
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Comment: Comment: Why am I getting such a big difference in alignment rates in kallisto?
3 months ago by bioinfo ▴ 150
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371
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Comment: Comment: Where are the illumina adapters on Trimmomatic take from?
3 months ago by bioinfo ▴ 150
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425
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Comment: Comment: Why does assigning genes with biomart give me different values than using a tran
4 months ago by bioinfo ▴ 150
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897
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Comment: Comment: How should I make kallisto indexes?
4 months ago by bioinfo ▴ 150
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417
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Comment: Comment: Can I compare kallisto counts from samples with different amount of reads?
5 months ago by bioinfo ▴ 150
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482
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Comment: Comment: How to row normalize a matrixplot?
5 months ago by bioinfo ▴ 150
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493
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Comment: Comment: How to compare bulk RNA seq data demultiplexed in different ways?
5 months ago by bioinfo ▴ 150
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493
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Comment: Comment: How to compare bulk RNA seq data demultiplexed in different ways?
5 months ago by bioinfo ▴ 150
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828
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Comment: Comment: How does kallisto handle multi mapped reads?
6 months ago by bioinfo ▴ 150
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828
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Comment: Comment: How does kallisto handle multi mapped reads?
6 months ago by bioinfo ▴ 150
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1.2k
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Comment: Comment: How much adapters is it ok to keep in my samples after RNA seq?
10 months ago by bioinfo ▴ 150
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1.2k
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Comment: Comment: How much adapters is it ok to keep in my samples after RNA seq?
10 months ago by bioinfo ▴ 150
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1
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1.2k
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Comment: Comment: How much adapters is it ok to keep in my samples after RNA seq?
10 months ago by bioinfo ▴ 150
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886
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Comment: Comment: Why am I getting different results with kallisto?
10 months ago by bioinfo ▴ 150
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1
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886
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Comment: Comment: Why am I getting different results with kallisto?
10 months ago by bioinfo ▴ 150
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1
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886
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Comment: Comment: Why am I getting different results with kallisto?
10 months ago by bioinfo ▴ 150
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1
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676
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Comment: Comment: Are truseq adapter sequences picked up by FASTQC?
10 months ago by bioinfo ▴ 150
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894
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Comment: Comment: How to assign gene names after kallisto when I add GFP?
11 months ago by bioinfo ▴ 150
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1
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894
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Comment: Comment: How to assign gene names after kallisto when I add GFP?
11 months ago by bioinfo ▴ 150
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3.0k
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Comment: Comment: How to plot proportion of cells in each cluster with scanpy?
11 months ago by bioinfo ▴ 150
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3.0k
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Comment: Comment: How to plot proportion of cells in each cluster with scanpy?
11 months ago by bioinfo ▴ 150
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1
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3.0k
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Comment: Comment: How to plot proportion of cells in each cluster with scanpy?
11 months ago by bioinfo ▴ 150
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1
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3.0k
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Comment: Comment: How to plot proportion of cells in each cluster with scanpy?
11 months ago by bioinfo ▴ 150
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798
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Comment: Comment: How to calculate GC content of reads that mapped to a specific gene?
12 months ago by bioinfo ▴ 150
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1.1k
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Comment: Comment: Can the DESeq2 object for paired data be set with design= ~ batch + condition?
12 months ago by bioinfo ▴ 150
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1.1k
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Comment: Comment: Can the DESeq2 object for paired data be set with design= ~ batch + condition?
12 months ago by bioinfo ▴ 150
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1.1k
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Comment: Comment: Can the DESeq2 object for paired data be set with design= ~ batch + condition?
12 months ago by bioinfo ▴ 150
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1
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1.1k
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Comment: Comment: Can the DESeq2 object for paired data be set with design= ~ batch + condition?
12 months ago by bioinfo ▴ 150
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1.2k
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Comment: Comment: Questions about per base sequence quality and GC content.
13 months ago by bioinfo ▴ 150
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1
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1.2k
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Comment: Comment: Questions about per base sequence quality and GC content.
13 months ago by bioinfo ▴ 150
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1.4k
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Comment: Comment: How to choose threshold for scrublet?
13 months ago by bioinfo ▴ 150
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1.2k
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Comment: Comment: Questions about per base sequence quality and GC content.
13 months ago by bioinfo ▴ 150
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865
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Comment: Comment: How to assign gene names to ensembl IDs if species not in Biomart
13 months ago by bioinfo ▴ 150
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2
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2.3k
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Comment: Comment: Why do I need to sort and index gtf file for IGV?
14 months ago by bioinfo ▴ 150
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849
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Comment: Comment: Where can I find the --chromosomes file for kallisto?
14 months ago by bioinfo ▴ 150
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948
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Comment: Comment: Does adding reads cause batch effects?
15 months ago by bioinfo ▴ 150
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948
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Comment: Comment: Does adding reads cause batch effects?
15 months ago by bioinfo ▴ 150
1
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1.6k
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Comment: Comment: How to demultiplex data with totalseq B antibodies using hashsolo?
17 months ago by bioinfo ▴ 150
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1
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1.6k
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Comment: Comment: How to demultiplex data with totalseq B antibodies using hashsolo?
17 months ago by bioinfo ▴ 150
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0
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746
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Comment: Comment: Do I need to specify the introns on the gtf file for cellranger?
17 months ago by bioinfo ▴ 150
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1.7k
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Comment: Comment: How to add gene entry to gtf file?
18 months ago by bioinfo ▴ 150
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1.7k
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Comment: Comment: How to add gene entry to gtf file?
18 months ago by bioinfo ▴ 150
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2
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1.7k
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Comment: Comment: How to add gene entry to gtf file?
18 months ago by bioinfo ▴ 150
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1.4k
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Comment: Comment: How to interpret dotplot from enrichment analysis with gseapy?
19 months ago by bioinfo ▴ 150
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1.4k
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Comment: Comment: How to interpret dotplot from enrichment analysis with gseapy?
19 months ago by bioinfo ▴ 150
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5.6k
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Comment: Comment: Encountering error when loading scanpy?
19 months ago by bioinfo ▴ 150
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2
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964
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Comment: Comment: How to remove a gene before making a cellranger reference?
19 months ago by bioinfo ▴ 150
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