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Comment:
Comment: How should I make kallisto indexes?
4 days ago by
bioinfo
▴ 150
0
votes
0
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296
views
Comment:
Comment: Can I compare kallisto counts from samples with different amount of reads?
17 days ago by
bioinfo
▴ 150
0
votes
0
replies
285
views
Comment:
Comment: How to row normalize a matrixplot?
18 days ago by
bioinfo
▴ 150
0
votes
0
replies
312
views
Comment:
Comment: How to compare bulk RNA seq data demultiplexed in different ways?
4 weeks ago by
bioinfo
▴ 150
0
votes
1
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312
views
Comment:
Comment: How to compare bulk RNA seq data demultiplexed in different ways?
4 weeks ago by
bioinfo
▴ 150
0
votes
1
reply
510
views
Comment:
Comment: How does kallisto handle multi mapped reads?
10 weeks ago by
bioinfo
▴ 150
0
votes
1
reply
510
views
Comment:
Comment: How does kallisto handle multi mapped reads?
10 weeks ago by
bioinfo
▴ 150
0
votes
1
reply
980
views
Comment:
Comment: How much adapters is it ok to keep in my samples after RNA seq?
5 months ago by
bioinfo
▴ 150
0
votes
1
reply
980
views
Comment:
Comment: How much adapters is it ok to keep in my samples after RNA seq?
5 months ago by
bioinfo
▴ 150
0
votes
1
reply
980
views
Comment:
Comment: How much adapters is it ok to keep in my samples after RNA seq?
5 months ago by
bioinfo
▴ 150
0
votes
0
replies
683
views
Comment:
Comment: Why am I getting different results with kallisto?
5 months ago by
bioinfo
▴ 150
0
votes
1
reply
683
views
Comment:
Comment: Why am I getting different results with kallisto?
5 months ago by
bioinfo
▴ 150
0
votes
1
reply
683
views
Comment:
Comment: Why am I getting different results with kallisto?
5 months ago by
bioinfo
▴ 150
0
votes
1
reply
485
views
Comment:
Comment: Are truseq adapter sequences picked up by FASTQC?
5 months ago by
bioinfo
▴ 150
0
votes
0
replies
698
views
Comment:
Comment: How to assign gene names after kallisto when I add GFP?
6 months ago by
bioinfo
▴ 150
0
votes
1
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698
views
Comment:
Comment: How to assign gene names after kallisto when I add GFP?
6 months ago by
bioinfo
▴ 150
0
votes
0
replies
1.9k
views
Comment:
Comment: How to plot proportion of cells in each cluster with scanpy?
7 months ago by
bioinfo
▴ 150
0
votes
0
replies
1.9k
views
Comment:
Comment: How to plot proportion of cells in each cluster with scanpy?
7 months ago by
bioinfo
▴ 150
0
votes
1
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1.9k
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Comment:
Comment: How to plot proportion of cells in each cluster with scanpy?
7 months ago by
bioinfo
▴ 150
0
votes
1
reply
1.9k
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Comment:
Comment: How to plot proportion of cells in each cluster with scanpy?
7 months ago by
bioinfo
▴ 150
0
votes
0
replies
664
views
Comment:
Comment: How to calculate GC content of reads that mapped to a specific gene?
8 months ago by
bioinfo
▴ 150
0
votes
0
replies
910
views
Comment:
Comment: Can the DESeq2 object for paired data be set with design= ~ batch + condition?
8 months ago by
bioinfo
▴ 150
0
votes
1
reply
910
views
Comment:
Comment: Can the DESeq2 object for paired data be set with design= ~ batch + condition?
8 months ago by
bioinfo
▴ 150
0
votes
0
replies
910
views
Comment:
Comment: Can the DESeq2 object for paired data be set with design= ~ batch + condition?
8 months ago by
bioinfo
▴ 150
0
votes
1
reply
910
views
Comment:
Comment: Can the DESeq2 object for paired data be set with design= ~ batch + condition?
8 months ago by
bioinfo
▴ 150
0
votes
0
replies
953
views
Comment:
Comment: Questions about per base sequence quality and GC content.
8 months ago by
bioinfo
▴ 150
0
votes
1
reply
953
views
Comment:
Comment: Questions about per base sequence quality and GC content.
8 months ago by
bioinfo
▴ 150
0
votes
0
replies
987
views
Comment:
Comment: How to choose threshold for scrublet?
8 months ago by
bioinfo
▴ 150
0
votes
0
replies
953
views
Comment:
Comment: Questions about per base sequence quality and GC content.
8 months ago by
bioinfo
▴ 150
0
votes
0
replies
726
views
Comment:
Comment: How to assign gene names to ensembl IDs if species not in Biomart
8 months ago by
bioinfo
▴ 150
0
votes
2
replies
1.5k
views
Comment:
Comment: Why do I need to sort and index gtf file for IGV?
9 months ago by
bioinfo
▴ 150
0
votes
0
replies
737
views
Comment:
Comment: Where can I find the --chromosomes file for kallisto?
9 months ago by
bioinfo
▴ 150
0
votes
0
replies
793
views
Comment:
Comment: Does adding reads cause batch effects?
11 months ago by
bioinfo
▴ 150
0
votes
1
reply
793
views
Comment:
Comment: Does adding reads cause batch effects?
11 months ago by
bioinfo
▴ 150
1
vote
0
replies
1.3k
views
Comment:
Comment: How to demultiplex data with totalseq B antibodies using hashsolo?
12 months ago by
bioinfo
▴ 150
0
votes
1
reply
1.3k
views
Comment:
Comment: How to demultiplex data with totalseq B antibodies using hashsolo?
12 months ago by
bioinfo
▴ 150
0
votes
0
replies
637
views
Comment:
Comment: Do I need to specify the introns on the gtf file for cellranger?
12 months ago by
bioinfo
▴ 150
0
votes
0
replies
1.4k
views
Comment:
Comment: How to add gene entry to gtf file?
14 months ago by
bioinfo
▴ 150
0
votes
0
replies
1.4k
views
Comment:
Comment: How to add gene entry to gtf file?
14 months ago by
bioinfo
▴ 150
0
votes
2
replies
1.4k
views
Comment:
Comment: How to add gene entry to gtf file?
14 months ago by
bioinfo
▴ 150
0
votes
0
replies
1.2k
views
Comment:
Comment: How to interpret dotplot from enrichment analysis with gseapy?
14 months ago by
bioinfo
▴ 150
0
votes
1
reply
1.2k
views
Comment:
Comment: How to interpret dotplot from enrichment analysis with gseapy?
14 months ago by
bioinfo
▴ 150
0
votes
0
replies
4.8k
views
Comment:
Comment: Encountering error when loading scanpy?
14 months ago by
bioinfo
▴ 150
0
votes
2
replies
827
views
Comment:
Comment: How to remove a gene before making a cellranger reference?
14 months ago by
bioinfo
▴ 150
0
votes
0
replies
496
views
Comment:
Comment: Do I need to merge files after downloading them from SRA?
14 months ago by
bioinfo
▴ 150
0
votes
0
replies
2.1k
views
Comment:
Comment: How to make a UMAP for single cell data and color cells by average expression of
14 months ago by
bioinfo
▴ 150
0
votes
0
replies
1.1k
views
Comment:
Comment: Problem with tximport and plasmodium falciparum
14 months ago by
bioinfo
▴ 150
0
votes
1
reply
1.1k
views
Comment:
Comment: Problem with tximport and plasmodium falciparum
15 months ago by
bioinfo
▴ 150
0
votes
0
replies
1.1k
views
Comment:
Comment: How to perform scRNA seq analysis?
16 months ago by
bioinfo
▴ 150
0
votes
0
replies
1.4k
views
Comment:
Comment: Issues with chromosome file in kallisto
16 months ago by
bioinfo
▴ 150
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