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475
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Concatenation of adata and losing .var
single seq cell RNA scanpy
3 months ago by bioinfo ▴ 160
0
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1
reply
807
views
How to run trajectory analysis with only one cell type using palantir?
palantir scanpy
updated 4 months ago by ▴ 20 • written 16 months ago by ▴ 160
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1
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719
views
Comment: Comment: How to add GFP in STAR reference?
5 months ago by bioinfo ▴ 160
1
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4
replies
719
views
How to add GFP in STAR reference?
STAR
updated 5 months ago by 154k • written 5 months ago by ▴ 160
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3
replies
1.1k
views
Random seed in scanpy
scanpy scRNAseq single-cell
updated 5 months ago by 90k • written 5 months ago by ▴ 160
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0
replies
1.1k
views
Comment: Comment: Random seed in scanpy
5 months ago by bioinfo ▴ 160
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0
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825
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Comment: Comment: DESeq2 outliers-should I be concerned?
5 months ago by bioinfo ▴ 160
4
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2
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825
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DESeq2 outliers-should I be concerned?
deseq2
updated 5 months ago by 90k • written 5 months ago by ▴ 160
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0
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747
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Comment: Comment: Kallisto to tximport to deseq2
6 months ago by bioinfo ▴ 160
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2
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747
views
Kallisto to tximport to deseq2
enseml deseq2 Kallisto
updated 6 months ago by 154k • written 6 months ago by ▴ 160
0
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0
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708
views
Comment: Comment: Question about assigning gene names, tximport and DESeq2
7 months ago by bioinfo ▴ 160
0
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2
replies
708
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Question about assigning gene names, tximport and DESeq2
tximport deseq2
7 months ago by bioinfo ▴ 160
1
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3
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4.5k
views
How to use harmony with scanpy?
scanpy harmony
updated 8 months ago by • 0 • written 8 months ago by ▴ 160
2
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2
replies
915
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Should I not have any adapters after trimming?
RNA-seq
updated 8 months ago by 15k • written 8 months ago by ▴ 160
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0
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4.5k
views
Comment: Comment: How to use harmony with scanpy?
8 months ago by bioinfo ▴ 160
0
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0
replies
504
views
Does the order of HTOs matter?
hashsolo scanpy
10 months ago by bioinfo ▴ 160
0
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0
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622
views
Regression and scaling in scanpy
scanpy
11 months ago by bioinfo ▴ 160
0
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0
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1.1k
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Comment: Comment: Why does assigning genes with biomart give me different values than using a tran
13 months ago by bioinfo ▴ 160
0
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1
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1.3k
views
When should I normalize and subset adata objects in scanpy?
scanpy scRNA-seq single-cell
updated 15 months ago by 5.2k • written 15 months ago by ▴ 160
2
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1
reply
828
views
How to choose cells that co-express several genes with scanpy?
scanpy scRNA-seq single-cell
updated 15 months ago by 5.2k • written 15 months ago by ▴ 160
2
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1
reply
853
views
Do I need to remove doublets after before or after running hashsolo?
hashsolo scanpy scrublet
updated 16 months ago by ▴ 940 • written 16 months ago by ▴ 160
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0
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834
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Comment: Comment: How can I import an unindexed human gtf file in IGV?
16 months ago by bioinfo ▴ 160
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2
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834
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How can I import an unindexed human gtf file in IGV?
igv
16 months ago by bioinfo ▴ 160
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0
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1.5k
views
Comment: Comment: Why am I getting such a big difference in alignment rates in kallisto?
17 months ago by bioinfo ▴ 160
0
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1
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1.5k
views
Comment: Comment: Why am I getting such a big difference in alignment rates in kallisto?
17 months ago by bioinfo ▴ 160
0
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1
reply
1.5k
views
Comment: Comment: Why am I getting such a big difference in alignment rates in kallisto?
17 months ago by bioinfo ▴ 160
0
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6
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1.5k
views
Why am I getting such a big difference in alignment rates in kallisto?
kallisto ensembl
17 months ago by bioinfo ▴ 160
0
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1
reply
1.1k
views
Comment: Comment: Where are the illumina adapters on Trimmomatic take from?
17 months ago by bioinfo ▴ 160
1
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3
replies
1.1k
views
Where are the illumina adapters on Trimmomatic take from?
rna-seq trimmomatic
updated 17 months ago by 154k • written 17 months ago by ▴ 160
0
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0
replies
1.1k
views
Comment: Comment: Why does assigning genes with biomart give me different values than using a tran
18 months ago by bioinfo ▴ 160
2
votes
3
replies
1.1k
views
Why does assigning genes with biomart give me different values than using a transcripts_to_genes.txt file?
biomart RNAseq kallisto
13 months ago by bioinfo ▴ 160
0
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1
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2.6k
views
Comment: Comment: How should I make kallisto indexes?
18 months ago by bioinfo ▴ 160
1
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5
replies
2.6k
views
How should I make kallisto indexes?
kallisto
updated 18 months ago by ★ 7.8k • written 19 months ago by ▴ 160
0
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0
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984
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Comment: Comment: Can I compare kallisto counts from samples with different amount of reads?
19 months ago by bioinfo ▴ 160
0
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0
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1.2k
views
Comment: Comment: How to row normalize a matrixplot?
19 months ago by bioinfo ▴ 160
1
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2
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984
views
Can I compare kallisto counts from samples with different amount of reads?
RNA-seq kallisto
19 months ago by bioinfo ▴ 160
2
votes
2
replies
1.2k
views
How to row normalize a matrixplot?
scRNA-seq RNA-seq single-cell scanpy
19 months ago by bioinfo ▴ 160
0
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1
reply
1.6k
views
How to do DE between cells expressing specific gene in scanpy?
scRNA-seq single-cell scanpy
updated 19 months ago by 45k • written 19 months ago by ▴ 160
0
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0
replies
1.3k
views
Comment: Comment: How to compare bulk RNA seq data demultiplexed in different ways?
19 months ago by bioinfo ▴ 160
0
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1
reply
1.3k
views
Comment: Comment: How to compare bulk RNA seq data demultiplexed in different ways?
19 months ago by bioinfo ▴ 160
0
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5
replies
1.3k
views
How to compare bulk RNA seq data demultiplexed in different ways?
RNA-seq
updated 19 months ago by 45k • written 19 months ago by ▴ 160
0
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1
reply
2.0k
views
Comment: Comment: How does kallisto handle multi mapped reads?
20 months ago by bioinfo ▴ 160
0
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1
reply
2.0k
views
Comment: Comment: How does kallisto handle multi mapped reads?
20 months ago by bioinfo ▴ 160
3
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7
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2.0k
views
How does kallisto handle multi mapped reads?
kallisto
updated 20 months ago by ★ 7.8k • written 20 months ago by ▴ 160
0
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2
replies
1.4k
views
How to add motifs in cellranger-arc reference?
gtf scRNAseq fasta cellranger
updated 18 months ago by • 0 • written 20 months ago by ▴ 160
0
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0
replies
800
views
How to do KEGG pathway analysis when I have a gene with multiple entrez IDs?
biomart kegg deseq2
23 months ago by bioinfo ▴ 160
4
votes
2
replies
1.5k
views
Does DESeq2 correct for library size when importing the counts with DESeqDataSetFromMatrix?
rna-seq deseq2
updated 24 months ago by 22k • written 24 months ago by ▴ 160
0
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1
reply
2.3k
views
Comment: Comment: How much adapters is it ok to keep in my samples after RNA seq?
24 months ago by bioinfo ▴ 160
0
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1
reply
2.3k
views
Comment: Comment: How much adapters is it ok to keep in my samples after RNA seq?
24 months ago by bioinfo ▴ 160
0
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1
reply
2.3k
views
Comment: Comment: How much adapters is it ok to keep in my samples after RNA seq?
24 months ago by bioinfo ▴ 160
168 results • Page 1 of 4
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