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1
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183
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Do indexes made with cDNA fasta file contain only mRNAs?
ensembl kallisto
updated 17 days ago by ★ 4.0k • written 17 days ago by ▴ 50
0
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0
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180
views
How to analyze SCRNA seq data labelled with LARRY?
single lineage RNA tracing LARRY
updated 21 days ago by 127k • written 21 days ago by ▴ 50
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0
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407
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Comment: Comment: How to add gene entry to gtf file?
24 days ago by bioinfo ▴ 50
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0
replies
407
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Comment: Comment: How to add gene entry to gtf file?
25 days ago by bioinfo ▴ 50
0
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2
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407
views
Comment: Comment: How to add gene entry to gtf file?
25 days ago by bioinfo ▴ 50
2
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5
replies
407
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How to add gene entry to gtf file?
single-cell cellranger
updated 25 days ago by 38k • written 25 days ago by ▴ 50
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0
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428
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Comment: Comment: How to interpret dotplot from enrichment analysis with gseapy?
4 weeks ago by bioinfo ▴ 50
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1
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428
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Comment: Comment: How to interpret dotplot from enrichment analysis with gseapy?
4 weeks ago by bioinfo ▴ 50
2
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5
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572
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Problem with tximport and plasmodium falciparum
tximport
4 weeks ago by bioinfo ▴ 50
2
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0
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572
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Answer: Answer: Problem with tximport and plasmodium falciparum
4 weeks ago by bioinfo ▴ 50
1
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3
replies
615
views
How to make a UMAP for single cell data and color cells by average expression of a list of genes in scanpy?
single-cell scanpy RNA-seq UMAP
4 weeks ago by bioinfo ▴ 50
1
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0
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615
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Answer: Answer: How to make a UMAP for single cell data and color cells by average expression of
4 weeks ago by bioinfo ▴ 50
0
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0
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942
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Comment: Comment: Encountering error when loading scanpy?
4 weeks ago by bioinfo ▴ 50
1
vote
5
replies
428
views
How to interpret dotplot from enrichment analysis with gseapy?
gsea single-cell gseapy enrichR
4 weeks ago by bioinfo ▴ 50
3
votes
4
replies
370
views
How to remove a gene before making a cellranger reference?
fasta gtf cellranger scRNAseq
updated 5 weeks ago by 70k • written 5 weeks ago by ▴ 50
0
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2
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370
views
Comment: Comment: How to remove a gene before making a cellranger reference?
5 weeks ago by bioinfo ▴ 50
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0
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207
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Comment: Comment: Do I need to merge files after downloading them from SRA?
5 weeks ago by bioinfo ▴ 50
1
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2
replies
207
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Do I need to merge files after downloading them from SRA?
rna-seq sra
5 weeks ago by bioinfo ▴ 50
11
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8
replies
942
views
Encountering error when loading scanpy?
scanpy single-cell scRNA-seq
4 weeks ago by bioinfo ▴ 50
0
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0
replies
615
views
Comment: Comment: How to make a UMAP for single cell data and color cells by average expression of
5 weeks ago by bioinfo ▴ 50
0
votes
0
replies
572
views
Comment: Comment: Problem with tximport and plasmodium falciparum
6 weeks ago by bioinfo ▴ 50
0
votes
1
reply
572
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Comment: Comment: Problem with tximport and plasmodium falciparum
6 weeks ago by bioinfo ▴ 50
0
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0
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193
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What is the difference between gseapy.prerank and gseapy.gsea?
gseapy gsea
7 weeks ago by bioinfo ▴ 50
3
votes
2
replies
279
views
Do I need to correct for sequencing depth in bulk RNA seq?
kallisto RNA-seq
updated 6 weeks ago by 38k • written 8 weeks ago by ▴ 50
0
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0
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146
views
How to adjust graph in scanpy?
scanpy single-cell RNA-seq
8 weeks ago by bioinfo ▴ 50
0
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0
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241
views
How to analyze scRNA seq data with time points (Seurat/Pseudotime)?
monocle3 scRNA-seq pseudotime Seurat R
9 weeks ago by bioinfo ▴ 50
0
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0
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400
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Comment: Comment: How to perform scRNA seq analysis?
11 weeks ago by bioinfo ▴ 50
2
votes
2
replies
400
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How to perform scRNA seq analysis?
single-cell pseudobulk seurat
11 weeks ago by bioinfo ▴ 50
0
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0
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759
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Comment: Comment: Issues with chromosome file in kallisto
3 months ago by bioinfo ▴ 50
0
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1
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759
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Comment: Comment: Issues with chromosome file in kallisto
3 months ago by bioinfo ▴ 50
0
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0
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489
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Comment: Comment: Does the bootstrap in kallisto affect the BAM files?
3 months ago by bioinfo ▴ 50
3
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2
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489
views
Does the bootstrap in kallisto affect the BAM files?
RNAseq kallisto BAM
3 months ago by bioinfo ▴ 50
1
vote
4
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759
views
Issues with chromosome file in kallisto
kallisto
updated 3 months ago by ★ 4.0k • written 3 months ago by ▴ 50
1
vote
2
replies
314
views
How to run UMAP on single cell results from 2 different runs?
single-cell seurat cellranger
updated 3 months ago by 2.2k • written 3 months ago by ▴ 50
0
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1
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322
views
Comment: Comment: How to check gene properties (eg GC, repetitiveness, average expression level)?
4 months ago by bioinfo ▴ 50
0
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1
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498
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Comment: Comment: Can I demultiplex run based on i5 sequence?
4 months ago by bioinfo ▴ 50
0
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1
reply
498
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Comment: Comment: Can I demultiplex run based on i5 sequence?
4 months ago by bioinfo ▴ 50
1
vote
3
replies
322
views
How to check gene properties (eg GC, repetitiveness, average expression level)?
deseq2 kallisto RNA-seq
updated 6 weeks ago by 38k • written 4 months ago by ▴ 50
0
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1
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498
views
Comment: Comment: Can I demultiplex run based on i5 sequence?
4 months ago by bioinfo ▴ 50
0
votes
1
reply
498
views
Comment: Comment: Can I demultiplex run based on i5 sequence?
4 months ago by bioinfo ▴ 50
0
votes
1
reply
498
views
Comment: Comment: Can I demultiplex run based on i5 sequence?
4 months ago by bioinfo ▴ 50
0
votes
10
replies
498
views
Can I demultiplex run based on i5 sequence?
demultiplexing bcl2fastq
updated 4 months ago by 127k • written 4 months ago by ▴ 50
0
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1
reply
1.0k
views
Comment: Comment: How to choose parameters for kallisto single end mode?
4 months ago by bioinfo ▴ 50
2
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8
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1.0k
views
How to choose parameters for kallisto single end mode?
kallisto RNA-seq
updated 4 weeks ago by 38k • written 4 months ago by ▴ 50
0
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0
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1.0k
views
Comment: Comment: How to choose parameters for kallisto single end mode?
4 months ago by bioinfo ▴ 50
7
votes
3
replies
755
views
Should I merge my technical replicates for bulk RNA seq?
RNA-seq DESeq2
updated 6 weeks ago by 38k • written 5 months ago by ▴ 50
4
votes
4
replies
474
views
Can I perform DE analysis with Seurat if I only have one sample per condition?
single RNA Seq cell seurat
updated 5 months ago by 2.2k • written 5 months ago by ▴ 50
0
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0
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168
views
How do I get estimated gene counts for a reference that contains GFP using Kallisto?
gene ensembl tximport kallisto
6 months ago by bioinfo ▴ 50
0
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0
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574
views
Comment: Comment: How can I confirm that I installed bcl2fastq correctly?
6 months ago by bioinfo ▴ 50
0
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0
replies
574
views
Comment: Comment: How can I confirm that I installed bcl2fastq correctly?
6 months ago by bioinfo ▴ 50
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