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comments
0
votes
0
replies
330
views
Comment:
Comment: Kallisto to tximport to deseq2
4 days ago by
bioinfo
▴ 150
0
votes
2
replies
330
views
Kallisto to tximport to deseq2
enseml
deseq2
Kallisto
updated 4 days ago by
GenoMax
151k • written 5 days ago by
bioinfo
▴ 150
0
votes
0
replies
322
views
Comment:
Comment: Question about assigning gene names, tximport and DESeq2
4 weeks ago by
bioinfo
▴ 150
0
votes
2
replies
322
views
Question about assigning gene names, tximport and DESeq2
tximport
deseq2
4 weeks ago by
bioinfo
▴ 150
1
vote
3
replies
1.6k
views
How to use harmony with scanpy?
scanpy
harmony
updated 11 weeks ago by
Rezin
• 0 • written 3 months ago by
bioinfo
▴ 150
2
votes
2
replies
536
views
Should I not have any adapters after trimming?
RNA-seq
updated 3 months ago by
swbarnes2
14k • written 3 months ago by
bioinfo
▴ 150
0
votes
0
replies
1.6k
views
Comment:
Comment: How to use harmony with scanpy?
3 months ago by
bioinfo
▴ 150
0
votes
0
replies
308
views
Does the order of HTOs matter?
hashsolo
scanpy
4 months ago by
bioinfo
▴ 150
0
votes
0
replies
267
views
Regression and scaling in scanpy
scanpy
5 months ago by
bioinfo
▴ 150
0
votes
0
replies
798
views
Comment:
Comment: Why does assigning genes with biomart give me different values than using a tran
7 months ago by
bioinfo
▴ 150
0
votes
1
reply
788
views
When should I normalize and subset adata objects in scanpy?
scanpy
scRNA-seq
single-cell
updated 9 months ago by
LChart
4.9k • written 9 months ago by
bioinfo
▴ 150
2
votes
1
reply
530
views
How to choose cells that co-express several genes with scanpy?
scanpy
scRNA-seq
single-cell
updated 9 months ago by
LChart
4.9k • written 9 months ago by
bioinfo
▴ 150
0
votes
0
replies
307
views
How to run trajectory analysis with only one cell type using palantir?
palantir
scanpy
10 months ago by
bioinfo
▴ 150
2
votes
1
reply
552
views
Do I need to remove doublets after before or after running hashsolo?
hashsolo
scanpy
scrublet
updated 10 months ago by
tothepoint
▴ 940 • written 10 months ago by
bioinfo
▴ 150
0
votes
0
replies
558
views
Comment:
Comment: How can I import an unindexed human gtf file in IGV?
10 months ago by
bioinfo
▴ 150
0
votes
2
replies
558
views
How can I import an unindexed human gtf file in IGV?
igv
10 months ago by
bioinfo
▴ 150
0
votes
0
replies
1.0k
views
Comment:
Comment: Why am I getting such a big difference in alignment rates in kallisto?
11 months ago by
bioinfo
▴ 150
0
votes
1
reply
1.0k
views
Comment:
Comment: Why am I getting such a big difference in alignment rates in kallisto?
11 months ago by
bioinfo
▴ 150
0
votes
1
reply
1.0k
views
Comment:
Comment: Why am I getting such a big difference in alignment rates in kallisto?
11 months ago by
bioinfo
▴ 150
0
votes
6
replies
1.0k
views
Why am I getting such a big difference in alignment rates in kallisto?
kallisto
ensembl
11 months ago by
bioinfo
▴ 150
0
votes
1
reply
729
views
Comment:
Comment: Where are the illumina adapters on Trimmomatic take from?
11 months ago by
bioinfo
▴ 150
1
vote
3
replies
729
views
Where are the illumina adapters on Trimmomatic take from?
rna-seq
trimmomatic
updated 11 months ago by
GenoMax
151k • written 11 months ago by
bioinfo
▴ 150
0
votes
0
replies
798
views
Comment:
Comment: Why does assigning genes with biomart give me different values than using a tran
12 months ago by
bioinfo
▴ 150
2
votes
3
replies
798
views
Why does assigning genes with biomart give me different values than using a transcripts_to_genes.txt file?
biomart
RNAseq
kallisto
7 months ago by
bioinfo
▴ 150
0
votes
1
reply
1.7k
views
Comment:
Comment: How should I make kallisto indexes?
12 months ago by
bioinfo
▴ 150
1
vote
5
replies
1.7k
views
How should I make kallisto indexes?
kallisto
updated 12 months ago by
dsull
★ 7.5k • written 13 months ago by
bioinfo
▴ 150
0
votes
0
replies
661
views
Comment:
Comment: Can I compare kallisto counts from samples with different amount of reads?
13 months ago by
bioinfo
▴ 150
0
votes
0
replies
833
views
Comment:
Comment: How to row normalize a matrixplot?
13 months ago by
bioinfo
▴ 150
1
vote
2
replies
661
views
Can I compare kallisto counts from samples with different amount of reads?
RNA-seq
kallisto
13 months ago by
bioinfo
▴ 150
2
votes
2
replies
833
views
How to row normalize a matrixplot?
scRNA-seq
RNA-seq
single-cell
scanpy
13 months ago by
bioinfo
▴ 150
0
votes
1
reply
1.1k
views
How to do DE between cells expressing specific gene in scanpy?
scRNA-seq
single-cell
scanpy
updated 13 months ago by
Ram
45k • written 13 months ago by
bioinfo
▴ 150
0
votes
0
replies
927
views
Comment:
Comment: How to compare bulk RNA seq data demultiplexed in different ways?
13 months ago by
bioinfo
▴ 150
0
votes
1
reply
927
views
Comment:
Comment: How to compare bulk RNA seq data demultiplexed in different ways?
13 months ago by
bioinfo
▴ 150
0
votes
5
replies
927
views
How to compare bulk RNA seq data demultiplexed in different ways?
RNA-seq
updated 13 months ago by
Ram
45k • written 13 months ago by
bioinfo
▴ 150
0
votes
1
reply
1.4k
views
Comment:
Comment: How does kallisto handle multi mapped reads?
14 months ago by
bioinfo
▴ 150
0
votes
1
reply
1.4k
views
Comment:
Comment: How does kallisto handle multi mapped reads?
14 months ago by
bioinfo
▴ 150
3
votes
7
replies
1.4k
views
How does kallisto handle multi mapped reads?
kallisto
updated 14 months ago by
dsull
★ 7.5k • written 14 months ago by
bioinfo
▴ 150
0
votes
2
replies
921
views
How to add motifs in cellranger-arc reference?
gtf
scRNAseq
fasta
cellranger
updated 13 months ago by
Ehsan
• 0 • written 15 months ago by
bioinfo
▴ 150
0
votes
0
replies
557
views
How to do KEGG pathway analysis when I have a gene with multiple entrez IDs?
biomart
kegg
deseq2
17 months ago by
bioinfo
▴ 150
4
votes
2
replies
1.1k
views
Does DESeq2 correct for library size when importing the counts with DESeqDataSetFromMatrix?
rna-seq
deseq2
updated 18 months ago by
i.sudbery
21k • written 18 months ago by
bioinfo
▴ 150
0
votes
1
reply
1.7k
views
Comment:
Comment: How much adapters is it ok to keep in my samples after RNA seq?
18 months ago by
bioinfo
▴ 150
0
votes
1
reply
1.7k
views
Comment:
Comment: How much adapters is it ok to keep in my samples after RNA seq?
18 months ago by
bioinfo
▴ 150
0
votes
1
reply
1.7k
views
Comment:
Comment: How much adapters is it ok to keep in my samples after RNA seq?
18 months ago by
bioinfo
▴ 150
3
votes
7
replies
1.7k
views
How much adapters is it ok to keep in my samples after RNA seq?
RNA-seq
illumina
adapters
updated 13 months ago by
Ram
45k • written 18 months ago by
bioinfo
▴ 150
0
votes
0
replies
1.3k
views
Comment:
Comment: Why am I getting different results with kallisto?
18 months ago by
bioinfo
▴ 150
0
votes
1
reply
1.3k
views
Comment:
Comment: Why am I getting different results with kallisto?
18 months ago by
bioinfo
▴ 150
0
votes
1
reply
1.3k
views
Comment:
Comment: Why am I getting different results with kallisto?
18 months ago by
bioinfo
▴ 150
3
votes
4
replies
1.3k
views
Why am I getting different results with kallisto?
kallisto
18 months ago by
bioinfo
▴ 150
0
votes
1
reply
964
views
Comment:
Comment: Are truseq adapter sequences picked up by FASTQC?
18 months ago by
bioinfo
▴ 150
2
votes
3
replies
964
views
Are truseq adapter sequences picked up by FASTQC?
fastqc
truseq
updated 18 months ago by
GenoMax
151k • written 18 months ago by
bioinfo
▴ 150
161 results • Page
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