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351
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Comment: Comment: How to calculate GC content of reads that mapped to a specific gene?
19 days ago by bioinfo ▴ 110
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2
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351
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How to calculate GC content of reads that mapped to a specific gene?
STAR RNA-seq
19 days ago by bioinfo ▴ 110
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0
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486
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Comment: Comment: Can the DESeq2 object for paired data be set with design= ~ batch + condition?
25 days ago by bioinfo ▴ 110
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1
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486
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Comment: Comment: Can the DESeq2 object for paired data be set with design= ~ batch + condition?
25 days ago by bioinfo ▴ 110
0
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0
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486
views
Comment: Comment: Can the DESeq2 object for paired data be set with design= ~ batch + condition?
25 days ago by bioinfo ▴ 110
0
votes
1
reply
486
views
Comment: Comment: Can the DESeq2 object for paired data be set with design= ~ batch + condition?
25 days ago by bioinfo ▴ 110
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8
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486
views
Can the DESeq2 object for paired data be set with design= ~ batch + condition?
rna-seq deseq2
25 days ago by bioinfo ▴ 110
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1
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235
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Do I need to perform basic filtering before using scrublet?
scanpy scrublet
updated 4 weeks ago by 134k • written 4 weeks ago by ▴ 110
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0
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411
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Comment: Comment: Questions about per base sequence quality and GC content.
4 weeks ago by bioinfo ▴ 110
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1
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411
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Comment: Comment: Questions about per base sequence quality and GC content.
4 weeks ago by bioinfo ▴ 110
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0
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323
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Comment: Comment: How to choose threshold for scrublet?
4 weeks ago by bioinfo ▴ 110
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2
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323
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How to choose threshold for scrublet?
rna-seq scrublet
4 weeks ago by bioinfo ▴ 110
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0
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411
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Comment: Comment: Questions about per base sequence quality and GC content.
5 weeks ago by bioinfo ▴ 110
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5
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411
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Questions about per base sequence quality and GC content.
fastqc fastq seq RNA
4 weeks ago by bioinfo ▴ 110
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0
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377
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Comment: Comment: How to assign gene names to ensembl IDs if species not in Biomart
5 weeks ago by bioinfo ▴ 110
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3
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377
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How to assign gene names to ensembl IDs if species not in Biomart
biomart ensembl
5 weeks ago by bioinfo ▴ 110
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2
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359
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Comment: Comment: Why do I need to sort and index gtf file for IGV?
9 weeks ago by bioinfo ▴ 110
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4
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359
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Why do I need to sort and index gtf file for IGV?
igv
updated 9 weeks ago by 76k • written 9 weeks ago by ▴ 110
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0
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405
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Comment: Comment: Where can I find the --chromosomes file for kallisto?
10 weeks ago by bioinfo ▴ 110
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3
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405
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Where can I find the --chromosomes file for kallisto?
kallisto
updated 10 weeks ago by 134k • written 10 weeks ago by ▴ 110
3
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2
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344
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How to figure out adapter sequences in RNA seq?
adapters rna-seq
updated 12 weeks ago by ▴ 790 • written 12 weeks ago by ▴ 110
1
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0
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253
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How does kallisto genomebam handle multi mapping reads?
kallisto
updated 3 months ago by 40k • written 3 months ago by ▴ 110
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0
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511
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Comment: Comment: Does adding reads cause batch effects?
3 months ago by bioinfo ▴ 110
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1
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511
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Comment: Comment: Does adding reads cause batch effects?
3 months ago by bioinfo ▴ 110
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5
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511
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Does adding reads cause batch effects?
kallisto RNAseq
3 months ago by bioinfo ▴ 110
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0
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271
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Do I need to do QC before demultiplexing hashtags with hashsolo?
scanpy hashtag hashsolo RNAseq
5 months ago by bioinfo ▴ 110
1
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0
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801
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Comment: Comment: How to demultiplex data with totalseq B antibodies using hashsolo?
5 months ago by bioinfo ▴ 110
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1
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801
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Comment: Comment: How to demultiplex data with totalseq B antibodies using hashsolo?
5 months ago by bioinfo ▴ 110
1
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3
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801
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How to demultiplex data with totalseq B antibodies using hashsolo?
cellranger. seq hashsolo rna
5 months ago by bioinfo ▴ 110
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0
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362
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Comment: Comment: Do I need to specify the introns on the gtf file for cellranger?
5 months ago by bioinfo ▴ 110
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2
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362
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Do I need to specify the introns on the gtf file for cellranger?
fasta gtf cellranger scRNAseq
updated 5 months ago by 134k • written 5 months ago by ▴ 110
2
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1
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344
views
Can I normalize several samples with DESeq2 and then do pairwise comparisons?
deseq2 rna-seq
updated 5 months ago by 12k • written 5 months ago by ▴ 110
1
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1
reply
361
views
Do indexes made with cDNA fasta file contain only mRNAs?
ensembl kallisto
updated 6 months ago by ★ 4.7k • written 6 months ago by ▴ 110
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0
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266
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How to analyze SCRNA seq data labelled with LARRY?
single lineage RNA tracing LARRY
updated 6 months ago by 134k • written 6 months ago by ▴ 110
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0
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949
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Comment: Comment: How to add gene entry to gtf file?
6 months ago by bioinfo ▴ 110
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0
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949
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Comment: Comment: How to add gene entry to gtf file?
6 months ago by bioinfo ▴ 110
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2
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949
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Comment: Comment: How to add gene entry to gtf file?
6 months ago by bioinfo ▴ 110
2
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5
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949
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How to add gene entry to gtf file?
single-cell cellranger
updated 6 months ago by 40k • written 6 months ago by ▴ 110
0
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0
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782
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Comment: Comment: How to interpret dotplot from enrichment analysis with gseapy?
7 months ago by bioinfo ▴ 110
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1
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782
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Comment: Comment: How to interpret dotplot from enrichment analysis with gseapy?
7 months ago by bioinfo ▴ 110
2
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5
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844
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Problem with tximport and plasmodium falciparum
tximport
7 months ago by bioinfo ▴ 110
2
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0
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844
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Answer: Answer: Problem with tximport and plasmodium falciparum
7 months ago by bioinfo ▴ 110
1
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3
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1.3k
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How to make a UMAP for single cell data and color cells by average expression of a list of genes in scanpy?
single-cell scanpy RNA-seq UMAP
7 months ago by bioinfo ▴ 110
1
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0
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1.3k
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Answer: Answer: How to make a UMAP for single cell data and color cells by average expression of
7 months ago by bioinfo ▴ 110
0
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0
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2.5k
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Comment: Comment: Encountering error when loading scanpy?
7 months ago by bioinfo ▴ 110
1
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5
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782
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How to interpret dotplot from enrichment analysis with gseapy?
gsea single-cell gseapy enrichR
7 months ago by bioinfo ▴ 110
3
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4
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570
views
How to remove a gene before making a cellranger reference?
fasta gtf cellranger scRNAseq
updated 7 months ago by 76k • written 7 months ago by ▴ 110
0
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2
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570
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Comment: Comment: How to remove a gene before making a cellranger reference?
7 months ago by bioinfo ▴ 110
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0
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336
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Comment: Comment: Do I need to merge files after downloading them from SRA?
7 months ago by bioinfo ▴ 110
1
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2
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336
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Do I need to merge files after downloading them from SRA?
rna-seq sra
7 months ago by bioinfo ▴ 110
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