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423
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Concatenation of adata and losing .var
single seq cell RNA scanpy
6 weeks ago by bioinfo ▴ 160
0
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1
reply
722
views
How to run trajectory analysis with only one cell type using palantir?
palantir scanpy
updated 3 months ago by ▴ 20 • written 14 months ago by ▴ 160
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1
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600
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Comment: Comment: How to add GFP in STAR reference?
3 months ago by bioinfo ▴ 160
1
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4
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600
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How to add GFP in STAR reference?
STAR
updated 3 months ago by 153k • written 3 months ago by ▴ 160
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3
replies
871
views
Random seed in scanpy
scanpy scRNAseq single-cell
updated 3 months ago by 89k • written 3 months ago by ▴ 160
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0
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871
views
Comment: Comment: Random seed in scanpy
3 months ago by bioinfo ▴ 160
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0
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699
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Comment: Comment: DESeq2 outliers-should I be concerned?
4 months ago by bioinfo ▴ 160
4
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2
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699
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DESeq2 outliers-should I be concerned?
deseq2
updated 4 months ago by 89k • written 4 months ago by ▴ 160
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0
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641
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Comment: Comment: Kallisto to tximport to deseq2
4 months ago by bioinfo ▴ 160
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2
replies
641
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Kallisto to tximport to deseq2
enseml deseq2 Kallisto
updated 4 months ago by 153k • written 4 months ago by ▴ 160
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0
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601
views
Comment: Comment: Question about assigning gene names, tximport and DESeq2
5 months ago by bioinfo ▴ 160
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2
replies
601
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Question about assigning gene names, tximport and DESeq2
tximport deseq2
5 months ago by bioinfo ▴ 160
1
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3
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3.6k
views
How to use harmony with scanpy?
scanpy harmony
updated 6 months ago by • 0 • written 7 months ago by ▴ 160
2
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2
replies
819
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Should I not have any adapters after trimming?
RNA-seq
updated 7 months ago by 15k • written 7 months ago by ▴ 160
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0
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3.6k
views
Comment: Comment: How to use harmony with scanpy?
7 months ago by bioinfo ▴ 160
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0
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451
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Does the order of HTOs matter?
hashsolo scanpy
8 months ago by bioinfo ▴ 160
0
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0
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509
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Regression and scaling in scanpy
scanpy
9 months ago by bioinfo ▴ 160
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0
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1.0k
views
Comment: Comment: Why does assigning genes with biomart give me different values than using a tran
11 months ago by bioinfo ▴ 160
0
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1
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1.2k
views
When should I normalize and subset adata objects in scanpy?
scanpy scRNA-seq single-cell
updated 13 months ago by 5.1k • written 13 months ago by ▴ 160
2
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1
reply
741
views
How to choose cells that co-express several genes with scanpy?
scanpy scRNA-seq single-cell
updated 14 months ago by 5.1k • written 14 months ago by ▴ 160
2
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1
reply
762
views
Do I need to remove doublets after before or after running hashsolo?
hashsolo scanpy scrublet
updated 14 months ago by ▴ 940 • written 14 months ago by ▴ 160
0
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0
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772
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Comment: Comment: How can I import an unindexed human gtf file in IGV?
14 months ago by bioinfo ▴ 160
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2
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772
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How can I import an unindexed human gtf file in IGV?
igv
14 months ago by bioinfo ▴ 160
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0
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1.4k
views
Comment: Comment: Why am I getting such a big difference in alignment rates in kallisto?
15 months ago by bioinfo ▴ 160
0
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1
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1.4k
views
Comment: Comment: Why am I getting such a big difference in alignment rates in kallisto?
15 months ago by bioinfo ▴ 160
0
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1
reply
1.4k
views
Comment: Comment: Why am I getting such a big difference in alignment rates in kallisto?
15 months ago by bioinfo ▴ 160
0
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6
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1.4k
views
Why am I getting such a big difference in alignment rates in kallisto?
kallisto ensembl
15 months ago by bioinfo ▴ 160
0
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1
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1.0k
views
Comment: Comment: Where are the illumina adapters on Trimmomatic take from?
16 months ago by bioinfo ▴ 160
1
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3
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1.0k
views
Where are the illumina adapters on Trimmomatic take from?
rna-seq trimmomatic
updated 16 months ago by 153k • written 16 months ago by ▴ 160
0
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0
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1.0k
views
Comment: Comment: Why does assigning genes with biomart give me different values than using a tran
16 months ago by bioinfo ▴ 160
2
votes
3
replies
1.0k
views
Why does assigning genes with biomart give me different values than using a transcripts_to_genes.txt file?
biomart RNAseq kallisto
11 months ago by bioinfo ▴ 160
0
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1
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2.4k
views
Comment: Comment: How should I make kallisto indexes?
17 months ago by bioinfo ▴ 160
1
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5
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2.4k
views
How should I make kallisto indexes?
kallisto
updated 17 months ago by ★ 7.7k • written 17 months ago by ▴ 160
0
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0
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907
views
Comment: Comment: Can I compare kallisto counts from samples with different amount of reads?
17 months ago by bioinfo ▴ 160
0
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0
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1.1k
views
Comment: Comment: How to row normalize a matrixplot?
17 months ago by bioinfo ▴ 160
1
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2
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907
views
Can I compare kallisto counts from samples with different amount of reads?
RNA-seq kallisto
17 months ago by bioinfo ▴ 160
2
votes
2
replies
1.1k
views
How to row normalize a matrixplot?
scRNA-seq RNA-seq single-cell scanpy
17 months ago by bioinfo ▴ 160
0
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1
reply
1.5k
views
How to do DE between cells expressing specific gene in scanpy?
scRNA-seq single-cell scanpy
updated 17 months ago by 45k • written 17 months ago by ▴ 160
0
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0
replies
1.2k
views
Comment: Comment: How to compare bulk RNA seq data demultiplexed in different ways?
17 months ago by bioinfo ▴ 160
0
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1
reply
1.2k
views
Comment: Comment: How to compare bulk RNA seq data demultiplexed in different ways?
17 months ago by bioinfo ▴ 160
0
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5
replies
1.2k
views
How to compare bulk RNA seq data demultiplexed in different ways?
RNA-seq
updated 17 months ago by 45k • written 17 months ago by ▴ 160
0
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1
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1.8k
views
Comment: Comment: How does kallisto handle multi mapped reads?
19 months ago by bioinfo ▴ 160
0
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1
reply
1.8k
views
Comment: Comment: How does kallisto handle multi mapped reads?
19 months ago by bioinfo ▴ 160
3
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7
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1.8k
views
How does kallisto handle multi mapped reads?
kallisto
updated 19 months ago by ★ 7.7k • written 19 months ago by ▴ 160
0
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2
replies
1.3k
views
How to add motifs in cellranger-arc reference?
gtf scRNAseq fasta cellranger
updated 17 months ago by • 0 • written 19 months ago by ▴ 160
0
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0
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726
views
How to do KEGG pathway analysis when I have a gene with multiple entrez IDs?
biomart kegg deseq2
22 months ago by bioinfo ▴ 160
4
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2
replies
1.4k
views
Does DESeq2 correct for library size when importing the counts with DESeqDataSetFromMatrix?
rna-seq deseq2
updated 22 months ago by 22k • written 22 months ago by ▴ 160
0
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1
reply
2.1k
views
Comment: Comment: How much adapters is it ok to keep in my samples after RNA seq?
22 months ago by bioinfo ▴ 160
0
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1
reply
2.1k
views
Comment: Comment: How much adapters is it ok to keep in my samples after RNA seq?
22 months ago by bioinfo ▴ 160
0
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1
reply
2.1k
views
Comment: Comment: How much adapters is it ok to keep in my samples after RNA seq?
22 months ago by bioinfo ▴ 160
168 results • Page 1 of 4
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