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0
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0
replies
351
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Comment:
Comment: How to calculate GC content of reads that mapped to a specific gene?
19 days ago by
bioinfo
▴ 110
5
votes
2
replies
351
views
How to calculate GC content of reads that mapped to a specific gene?
STAR
RNA-seq
19 days ago by
bioinfo
▴ 110
0
votes
0
replies
486
views
Comment:
Comment: Can the DESeq2 object for paired data be set with design= ~ batch + condition?
25 days ago by
bioinfo
▴ 110
0
votes
1
reply
486
views
Comment:
Comment: Can the DESeq2 object for paired data be set with design= ~ batch + condition?
25 days ago by
bioinfo
▴ 110
0
votes
0
replies
486
views
Comment:
Comment: Can the DESeq2 object for paired data be set with design= ~ batch + condition?
25 days ago by
bioinfo
▴ 110
0
votes
1
reply
486
views
Comment:
Comment: Can the DESeq2 object for paired data be set with design= ~ batch + condition?
25 days ago by
bioinfo
▴ 110
0
votes
8
replies
486
views
Can the DESeq2 object for paired data be set with design= ~ batch + condition?
rna-seq
deseq2
25 days ago by
bioinfo
▴ 110
1
vote
1
reply
235
views
Do I need to perform basic filtering before using scrublet?
scanpy
scrublet
updated 4 weeks ago by
GenoMax
134k • written 4 weeks ago by
bioinfo
▴ 110
0
votes
0
replies
411
views
Comment:
Comment: Questions about per base sequence quality and GC content.
4 weeks ago by
bioinfo
▴ 110
0
votes
1
reply
411
views
Comment:
Comment: Questions about per base sequence quality and GC content.
4 weeks ago by
bioinfo
▴ 110
0
votes
0
replies
323
views
Comment:
Comment: How to choose threshold for scrublet?
4 weeks ago by
bioinfo
▴ 110
0
votes
2
replies
323
views
How to choose threshold for scrublet?
rna-seq
scrublet
4 weeks ago by
bioinfo
▴ 110
0
votes
0
replies
411
views
Comment:
Comment: Questions about per base sequence quality and GC content.
5 weeks ago by
bioinfo
▴ 110
0
votes
5
replies
411
views
Questions about per base sequence quality and GC content.
fastqc
fastq
seq
RNA
4 weeks ago by
bioinfo
▴ 110
0
votes
0
replies
377
views
Comment:
Comment: How to assign gene names to ensembl IDs if species not in Biomart
5 weeks ago by
bioinfo
▴ 110
3
votes
3
replies
377
views
How to assign gene names to ensembl IDs if species not in Biomart
biomart
ensembl
5 weeks ago by
bioinfo
▴ 110
0
votes
2
replies
359
views
Comment:
Comment: Why do I need to sort and index gtf file for IGV?
9 weeks ago by
bioinfo
▴ 110
0
votes
4
replies
359
views
Why do I need to sort and index gtf file for IGV?
igv
updated 9 weeks ago by
ATpoint
76k • written 9 weeks ago by
bioinfo
▴ 110
0
votes
0
replies
405
views
Comment:
Comment: Where can I find the --chromosomes file for kallisto?
10 weeks ago by
bioinfo
▴ 110
3
votes
3
replies
405
views
Where can I find the --chromosomes file for kallisto?
kallisto
updated 10 weeks ago by
GenoMax
134k • written 10 weeks ago by
bioinfo
▴ 110
3
votes
2
replies
344
views
How to figure out adapter sequences in RNA seq?
adapters
rna-seq
updated 12 weeks ago by
rfran010
▴ 790 • written 12 weeks ago by
bioinfo
▴ 110
1
vote
0
replies
253
views
How does kallisto genomebam handle multi mapping reads?
kallisto
updated 3 months ago by
Ram
40k • written 3 months ago by
bioinfo
▴ 110
0
votes
0
replies
511
views
Comment:
Comment: Does adding reads cause batch effects?
3 months ago by
bioinfo
▴ 110
0
votes
1
reply
511
views
Comment:
Comment: Does adding reads cause batch effects?
3 months ago by
bioinfo
▴ 110
4
votes
5
replies
511
views
Does adding reads cause batch effects?
kallisto
RNAseq
3 months ago by
bioinfo
▴ 110
0
votes
0
replies
271
views
Do I need to do QC before demultiplexing hashtags with hashsolo?
scanpy
hashtag
hashsolo
RNAseq
5 months ago by
bioinfo
▴ 110
1
vote
0
replies
801
views
Comment:
Comment: How to demultiplex data with totalseq B antibodies using hashsolo?
5 months ago by
bioinfo
▴ 110
0
votes
1
reply
801
views
Comment:
Comment: How to demultiplex data with totalseq B antibodies using hashsolo?
5 months ago by
bioinfo
▴ 110
1
vote
3
replies
801
views
How to demultiplex data with totalseq B antibodies using hashsolo?
cellranger.
seq
hashsolo
rna
5 months ago by
bioinfo
▴ 110
0
votes
0
replies
362
views
Comment:
Comment: Do I need to specify the introns on the gtf file for cellranger?
5 months ago by
bioinfo
▴ 110
0
votes
2
replies
362
views
Do I need to specify the introns on the gtf file for cellranger?
fasta
gtf
cellranger
scRNAseq
updated 5 months ago by
GenoMax
134k • written 5 months ago by
bioinfo
▴ 110
2
votes
1
reply
344
views
Can I normalize several samples with DESeq2 and then do pairwise comparisons?
deseq2
rna-seq
updated 5 months ago by
rpolicastro
12k • written 5 months ago by
bioinfo
▴ 110
1
vote
1
reply
361
views
Do indexes made with cDNA fasta file contain only mRNAs?
ensembl
kallisto
updated 6 months ago by
dsull
★ 4.7k • written 6 months ago by
bioinfo
▴ 110
0
votes
0
replies
266
views
How to analyze SCRNA seq data labelled with LARRY?
single
lineage
RNA
tracing
LARRY
updated 6 months ago by
GenoMax
134k • written 6 months ago by
bioinfo
▴ 110
0
votes
0
replies
949
views
Comment:
Comment: How to add gene entry to gtf file?
6 months ago by
bioinfo
▴ 110
0
votes
0
replies
949
views
Comment:
Comment: How to add gene entry to gtf file?
6 months ago by
bioinfo
▴ 110
0
votes
2
replies
949
views
Comment:
Comment: How to add gene entry to gtf file?
6 months ago by
bioinfo
▴ 110
2
votes
5
replies
949
views
How to add gene entry to gtf file?
single-cell
cellranger
updated 6 months ago by
Ram
40k • written 6 months ago by
bioinfo
▴ 110
0
votes
0
replies
782
views
Comment:
Comment: How to interpret dotplot from enrichment analysis with gseapy?
7 months ago by
bioinfo
▴ 110
0
votes
1
reply
782
views
Comment:
Comment: How to interpret dotplot from enrichment analysis with gseapy?
7 months ago by
bioinfo
▴ 110
2
votes
5
replies
844
views
Problem with tximport and plasmodium falciparum
tximport
7 months ago by
bioinfo
▴ 110
2
votes
0
replies
844
views
Answer:
Answer: Problem with tximport and plasmodium falciparum
7 months ago by
bioinfo
▴ 110
1
vote
3
replies
1.3k
views
How to make a UMAP for single cell data and color cells by average expression of a list of genes in scanpy?
single-cell
scanpy
RNA-seq
UMAP
7 months ago by
bioinfo
▴ 110
1
vote
0
replies
1.3k
views
Answer:
Answer: How to make a UMAP for single cell data and color cells by average expression of
7 months ago by
bioinfo
▴ 110
0
votes
0
replies
2.5k
views
Comment:
Comment: Encountering error when loading scanpy?
7 months ago by
bioinfo
▴ 110
1
vote
5
replies
782
views
How to interpret dotplot from enrichment analysis with gseapy?
gsea
single-cell
gseapy
enrichR
7 months ago by
bioinfo
▴ 110
3
votes
4
replies
570
views
How to remove a gene before making a cellranger reference?
fasta
gtf
cellranger
scRNAseq
updated 7 months ago by
ATpoint
76k • written 7 months ago by
bioinfo
▴ 110
0
votes
2
replies
570
views
Comment:
Comment: How to remove a gene before making a cellranger reference?
7 months ago by
bioinfo
▴ 110
0
votes
0
replies
336
views
Comment:
Comment: Do I need to merge files after downloading them from SRA?
7 months ago by
bioinfo
▴ 110
1
vote
2
replies
336
views
Do I need to merge files after downloading them from SRA?
rna-seq
sra
7 months ago by
bioinfo
▴ 110
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