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comments
1
vote
1
reply
183
views
Do indexes made with cDNA fasta file contain only mRNAs?
ensembl
kallisto
updated 17 days ago by
dsull
★ 4.0k • written 17 days ago by
bioinfo
▴ 50
0
votes
0
replies
180
views
How to analyze SCRNA seq data labelled with LARRY?
single
lineage
RNA
tracing
LARRY
updated 21 days ago by
GenoMax
127k • written 21 days ago by
bioinfo
▴ 50
0
votes
0
replies
407
views
Comment:
Comment: How to add gene entry to gtf file?
24 days ago by
bioinfo
▴ 50
0
votes
0
replies
407
views
Comment:
Comment: How to add gene entry to gtf file?
25 days ago by
bioinfo
▴ 50
0
votes
2
replies
407
views
Comment:
Comment: How to add gene entry to gtf file?
25 days ago by
bioinfo
▴ 50
2
votes
5
replies
407
views
How to add gene entry to gtf file?
single-cell
cellranger
updated 25 days ago by
Ram
38k • written 25 days ago by
bioinfo
▴ 50
0
votes
0
replies
428
views
Comment:
Comment: How to interpret dotplot from enrichment analysis with gseapy?
4 weeks ago by
bioinfo
▴ 50
0
votes
1
reply
428
views
Comment:
Comment: How to interpret dotplot from enrichment analysis with gseapy?
4 weeks ago by
bioinfo
▴ 50
2
votes
5
replies
572
views
Problem with tximport and plasmodium falciparum
tximport
4 weeks ago by
bioinfo
▴ 50
2
votes
0
replies
572
views
Answer:
Answer: Problem with tximport and plasmodium falciparum
4 weeks ago by
bioinfo
▴ 50
1
vote
3
replies
615
views
How to make a UMAP for single cell data and color cells by average expression of a list of genes in scanpy?
single-cell
scanpy
RNA-seq
UMAP
4 weeks ago by
bioinfo
▴ 50
1
vote
0
replies
615
views
Answer:
Answer: How to make a UMAP for single cell data and color cells by average expression of
4 weeks ago by
bioinfo
▴ 50
0
votes
0
replies
942
views
Comment:
Comment: Encountering error when loading scanpy?
4 weeks ago by
bioinfo
▴ 50
1
vote
5
replies
428
views
How to interpret dotplot from enrichment analysis with gseapy?
gsea
single-cell
gseapy
enrichR
4 weeks ago by
bioinfo
▴ 50
3
votes
4
replies
370
views
How to remove a gene before making a cellranger reference?
fasta
gtf
cellranger
scRNAseq
updated 5 weeks ago by
ATpoint
70k • written 5 weeks ago by
bioinfo
▴ 50
0
votes
2
replies
370
views
Comment:
Comment: How to remove a gene before making a cellranger reference?
5 weeks ago by
bioinfo
▴ 50
0
votes
0
replies
207
views
Comment:
Comment: Do I need to merge files after downloading them from SRA?
5 weeks ago by
bioinfo
▴ 50
1
vote
2
replies
207
views
Do I need to merge files after downloading them from SRA?
rna-seq
sra
5 weeks ago by
bioinfo
▴ 50
11
votes
8
replies
942
views
Encountering error when loading scanpy?
scanpy
single-cell
scRNA-seq
4 weeks ago by
bioinfo
▴ 50
0
votes
0
replies
615
views
Comment:
Comment: How to make a UMAP for single cell data and color cells by average expression of
5 weeks ago by
bioinfo
▴ 50
0
votes
0
replies
572
views
Comment:
Comment: Problem with tximport and plasmodium falciparum
6 weeks ago by
bioinfo
▴ 50
0
votes
1
reply
572
views
Comment:
Comment: Problem with tximport and plasmodium falciparum
6 weeks ago by
bioinfo
▴ 50
0
votes
0
replies
193
views
What is the difference between gseapy.prerank and gseapy.gsea?
gseapy
gsea
7 weeks ago by
bioinfo
▴ 50
3
votes
2
replies
279
views
Do I need to correct for sequencing depth in bulk RNA seq?
kallisto
RNA-seq
updated 6 weeks ago by
Ram
38k • written 8 weeks ago by
bioinfo
▴ 50
0
votes
0
replies
146
views
How to adjust graph in scanpy?
scanpy
single-cell
RNA-seq
8 weeks ago by
bioinfo
▴ 50
0
votes
0
replies
241
views
How to analyze scRNA seq data with time points (Seurat/Pseudotime)?
monocle3
scRNA-seq
pseudotime
Seurat
R
9 weeks ago by
bioinfo
▴ 50
0
votes
0
replies
400
views
Comment:
Comment: How to perform scRNA seq analysis?
11 weeks ago by
bioinfo
▴ 50
2
votes
2
replies
400
views
How to perform scRNA seq analysis?
single-cell
pseudobulk
seurat
11 weeks ago by
bioinfo
▴ 50
0
votes
0
replies
759
views
Comment:
Comment: Issues with chromosome file in kallisto
3 months ago by
bioinfo
▴ 50
0
votes
1
reply
759
views
Comment:
Comment: Issues with chromosome file in kallisto
3 months ago by
bioinfo
▴ 50
0
votes
0
replies
489
views
Comment:
Comment: Does the bootstrap in kallisto affect the BAM files?
3 months ago by
bioinfo
▴ 50
3
votes
2
replies
489
views
Does the bootstrap in kallisto affect the BAM files?
RNAseq
kallisto
BAM
3 months ago by
bioinfo
▴ 50
1
vote
4
replies
759
views
Issues with chromosome file in kallisto
kallisto
updated 3 months ago by
dsull
★ 4.0k • written 3 months ago by
bioinfo
▴ 50
1
vote
2
replies
314
views
How to run UMAP on single cell results from 2 different runs?
single-cell
seurat
cellranger
updated 3 months ago by
LChart
2.2k • written 3 months ago by
bioinfo
▴ 50
0
votes
1
reply
322
views
Comment:
Comment: How to check gene properties (eg GC, repetitiveness, average expression level)?
4 months ago by
bioinfo
▴ 50
0
votes
1
reply
498
views
Comment:
Comment: Can I demultiplex run based on i5 sequence?
4 months ago by
bioinfo
▴ 50
0
votes
1
reply
498
views
Comment:
Comment: Can I demultiplex run based on i5 sequence?
4 months ago by
bioinfo
▴ 50
1
vote
3
replies
322
views
How to check gene properties (eg GC, repetitiveness, average expression level)?
deseq2
kallisto
RNA-seq
updated 6 weeks ago by
Ram
38k • written 4 months ago by
bioinfo
▴ 50
0
votes
1
reply
498
views
Comment:
Comment: Can I demultiplex run based on i5 sequence?
4 months ago by
bioinfo
▴ 50
0
votes
1
reply
498
views
Comment:
Comment: Can I demultiplex run based on i5 sequence?
4 months ago by
bioinfo
▴ 50
0
votes
1
reply
498
views
Comment:
Comment: Can I demultiplex run based on i5 sequence?
4 months ago by
bioinfo
▴ 50
0
votes
10
replies
498
views
Can I demultiplex run based on i5 sequence?
demultiplexing
bcl2fastq
updated 4 months ago by
GenoMax
127k • written 4 months ago by
bioinfo
▴ 50
0
votes
1
reply
1.0k
views
Comment:
Comment: How to choose parameters for kallisto single end mode?
4 months ago by
bioinfo
▴ 50
2
votes
8
replies
1.0k
views
How to choose parameters for kallisto single end mode?
kallisto
RNA-seq
updated 4 weeks ago by
Ram
38k • written 4 months ago by
bioinfo
▴ 50
0
votes
0
replies
1.0k
views
Comment:
Comment: How to choose parameters for kallisto single end mode?
4 months ago by
bioinfo
▴ 50
7
votes
3
replies
755
views
Should I merge my technical replicates for bulk RNA seq?
RNA-seq
DESeq2
updated 6 weeks ago by
Ram
38k • written 5 months ago by
bioinfo
▴ 50
4
votes
4
replies
474
views
Can I perform DE analysis with Seurat if I only have one sample per condition?
single
RNA
Seq
cell
seurat
updated 5 months ago by
LChart
2.2k • written 5 months ago by
bioinfo
▴ 50
0
votes
0
replies
168
views
How do I get estimated gene counts for a reference that contains GFP using Kallisto?
gene
ensembl
tximport
kallisto
6 months ago by
bioinfo
▴ 50
0
votes
0
replies
574
views
Comment:
Comment: How can I confirm that I installed bcl2fastq correctly?
6 months ago by
bioinfo
▴ 50
0
votes
0
replies
574
views
Comment:
Comment: How can I confirm that I installed bcl2fastq correctly?
6 months ago by
bioinfo
▴ 50
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