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Comment: Comment: switchAnalyzeRlist conditions reversed
3.2 years ago by Trivas ★ 1.9k
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Answer: Answer: Deeptools - removing small clusters
3.2 years ago by Trivas ★ 1.9k
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Comment: Comment: For the given index number, find which amino acid is present in the given index
3.2 years ago by Trivas ★ 1.9k
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Best way to make a PCA plot integrating in-house data with public data?
tximport SRA RNA-seq plot PCA
updated 3.2 years ago by 3.3k • written 3.2 years ago by ★ 1.9k
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Comment: Comment: PlotPCA shows small plot in plot section of R studio
3.2 years ago by Trivas ★ 1.9k
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3.9k
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Answer: Answer: Trim Galore Anaconda
3.2 years ago by Trivas ★ 1.9k
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9.3k
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Comment: Comment: unimplemented type 'list' in 'EncodeElement' error in a Rscript run in Ubuntu te
3.2 years ago by Trivas ★ 1.9k
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2.2k
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Answer: Answer: Merging different fastq files into one folder
3.2 years ago by Trivas ★ 1.9k
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1.1k
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Answer: Answer: R Gviz - plot probes against a gene ( not the transcripts, just the gene)
3.2 years ago by Trivas ★ 1.9k
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856
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Answer: Answer: deeptools heatmap
3.2 years ago by Trivas ★ 1.9k
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1.0k
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Answer: Answer: how to use mirdeep2 without a small RNA library
3.2 years ago by Trivas ★ 1.9k
2
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1.4k
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Comment: Comment: Does comparison between two groups still make sense if PCA plot suggest no diffe
3.2 years ago by Trivas ★ 1.9k
2
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0
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1.4k
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Answer: Answer: Concatenate information columns from multiple identical bed files.
3.2 years ago by Trivas ★ 1.9k
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0
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719
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Comment: Comment: How to change KEGG identifiers to human-read gene names in heatmap function R
3.2 years ago by Trivas ★ 1.9k
2
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1.1k
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Comment: Comment: How can I create plot for unique and redundant miRNA using ggplot?
3.2 years ago by Trivas ★ 1.9k
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1.1k
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Comment: Comment: How can I create plot for unique and redundant miRNA using ggplot?
3.2 years ago by Trivas ★ 1.9k
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1.5k
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Answer: Answer: Help with adding variables to PCA
3.2 years ago by Trivas ★ 1.9k
2
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2
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1.9k
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Answer: Answer: Bam file from STAR
3.2 years ago by Trivas ★ 1.9k
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0
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3.0k
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Answer: Answer: How to delete all numbers after dot in a column in R?
3.2 years ago by Trivas ★ 1.9k
0
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1
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6.1k
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Comment: Comment: Extracting fasta sequence in R
3.2 years ago by Trivas ★ 1.9k
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2
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3.2k
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Comment: Comment: Convertion of FASTA file to FASTQ file
3.2 years ago by Trivas ★ 1.9k
0
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1
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892
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Comment: Comment: plotProfile couldn't generate the heatmap with right color
3.2 years ago by Trivas ★ 1.9k
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3
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2.8k
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Comment: Comment: DEXSeq - No Exon Counts
3.2 years ago by Trivas ★ 1.9k
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0
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1.3k
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Comment: Comment: Illumina base space
3.2 years ago by Trivas ★ 1.9k
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1.5k
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Comment: Comment: Materials and methods in thesis
3.3 years ago by Trivas ★ 1.9k
1
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1
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3.2k
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Comment: Comment: How do you normalize a heat map to the control?
3.3 years ago by Trivas ★ 1.9k
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3.2k
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Answer: Answer: How do you normalize a heat map to the control?
3.3 years ago by Trivas ★ 1.9k
0
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1
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1.0k
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Comment: Comment: Category or classification a list of genes into exonic, intronic and intergenic
3.3 years ago by Trivas ★ 1.9k
0
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1
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1.7k
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Comment: Comment: DEXSeq error
3.3 years ago by Trivas ★ 1.9k
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2
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1.6k
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Answer: Answer: Convert rows to columns delimited by each SNP ID
3.3 years ago by Trivas ★ 1.9k
0
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1
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810
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Answer: Answer: Finding the read ratio of transcription termination data using R
3.3 years ago by Trivas ★ 1.9k
2
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1
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5.0k
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Answer: Answer: How to make a TSS enrichment plot in ATAC-seq analysis?
3.3 years ago by Trivas ★ 1.9k
0
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0
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787
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Answer: Answer: Intergenic distance
3.3 years ago by Trivas ★ 1.9k
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0
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2.2k
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Comment: Comment: ggscatter, gene expression, correlation
3.3 years ago by Trivas ★ 1.9k
0
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1
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2.2k
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Comment: Comment: ggscatter, gene expression, correlation
3.3 years ago by Trivas ★ 1.9k
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1
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1.3k
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Comment: Comment: PCA plot for miRNA
3.3 years ago by Trivas ★ 1.9k
1
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1
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1.0k
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Answer: Answer: mRNA contamination in miRNA prep
3.3 years ago by Trivas ★ 1.9k
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0
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732
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Answer: Answer: DTU by combining different type of RNA seq data
3.3 years ago by Trivas ★ 1.9k
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1
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2.1k
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Comment: Comment: Error in making DESeq2 object
3.4 years ago by Trivas ★ 1.9k
3
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1
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2.2k
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Comment: Comment: ggscatter, gene expression, correlation
3.4 years ago by Trivas ★ 1.9k
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1
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2.1k
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Comment: Comment: Error in making DESeq2 object
3.4 years ago by Trivas ★ 1.9k
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0
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1.1k
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Answer: Answer: It is weird there are no reads less than 100 bp in qualimap.
3.4 years ago by Trivas ★ 1.9k
1
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1
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2.1k
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Answer: Answer: Error in making DESeq2 object
3.4 years ago by Trivas ★ 1.9k
4
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1
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1.4k
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Answer: Answer: gene expression, correlation, RNAseq
3.4 years ago by Trivas ★ 1.9k
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0
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938
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Answer: Answer: How can I convert mouse probe ID's from GEO (TC0500001894.mm.2) in this format -
3.4 years ago by Trivas ★ 1.9k
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0
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1.3k
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Comment: Comment: homer annotatePeaks.pl: is it possible to adjust the threshold for motif scan?
3.4 years ago by Trivas ★ 1.9k
1
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1
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1.3k
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Answer: Answer: homer annotatePeaks.pl: is it possible to adjust the threshold for motif scan?
3.4 years ago by Trivas ★ 1.9k
1
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0
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1.3k
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Answer: Answer: Next generation sequencing
3.4 years ago by Trivas ★ 1.9k
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1
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1.1k
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Answer: Answer: i got an error message in bowtie2 run
3.4 years ago by Trivas ★ 1.9k
0
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0
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762
views
Subsetting txdb object by "tx_name"
GRanges R Gviz
3.4 years ago by Trivas ★ 1.9k
311 results • Page 5 of 7
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