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461
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Comment: Comment: Using salmon on HISAT2 BAM files for transcript quantification
4 weeks ago by Trivas ▴ 590
3
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3
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273
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Adding lfcShrink to DESeq2 analysis
DGE DESeq2 lfcShrink
updated 7 weeks ago by 68k • written 7 weeks ago by ▴ 590
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1
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301
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Comment: Comment: deeptools heatmap mostly empty
7 weeks ago by Trivas ▴ 590
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0
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676
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Comment: Comment: Easier way to add another column if values in another fall within a range in R
8 weeks ago by Trivas ▴ 590
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0
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607
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Answer: Answer: Finding unique and identical rows between multiple columns of a data frame in R
3 months ago by Trivas ▴ 590
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1
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846
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Comment: Comment: Differential expression analysis
3 months ago by Trivas ▴ 590
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2
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846
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Answer: Answer: Differential expression analysis
3 months ago by Trivas ▴ 590
1
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0
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370
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Comment: Comment: How can I get counts from transgenic expression in RNA-seq data?
3 months ago by Trivas ▴ 590
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0
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321
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Comment: Comment: problem with tidyverse for gene expression profile
3 months ago by Trivas ▴ 590
1
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1
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590
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Comment: Comment: Get transcription factor motif from list of gene symbols
3 months ago by Trivas ▴ 590
0
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1
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590
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Comment: Comment: Get transcription factor motif from list of gene symbols
3 months ago by Trivas ▴ 590
4
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6
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590
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Get transcription factor motif from list of gene symbols
motif factor R transcription
updated 3 months ago by 2.9k • written 3 months ago by ▴ 590
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0
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429
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Comment: Comment: How to perform paired t-test in R for obtaining p-value of each gene?
3 months ago by Trivas ▴ 590
1
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1
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218
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Answer: Answer: Gviz group labels overlap
4 months ago by Trivas ▴ 590
0
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0
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342
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Comment: Comment: What is the best way to pre-process RNA-Seq data?
4 months ago by Trivas ▴ 590
1
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1
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340
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Answer: Answer: Detection of guest reads in Dual RNA-Seq
4 months ago by Trivas ▴ 590
0
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1
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384
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Comment: Comment: Help with plotting DEG-specific heatmap
4 months ago by Trivas ▴ 590
0
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1
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245
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Comment: Comment: qPCR RT experiment set up
4 months ago by Trivas ▴ 590
0
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1
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365
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Comment: Comment: Genes time-series plots
4 months ago by Trivas ▴ 590
0
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1
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365
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Answer: Answer: Genes time-series plots
4 months ago by Trivas ▴ 590
0
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0
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183
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Answer: Answer: Mark exons and introns in Querey based on NCBI graphics
4 months ago by Trivas ▴ 590
1
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0
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455
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Comment: Comment: How to annotate probe to nearest gene promoter?
5 months ago by Trivas ▴ 590
0
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1
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457
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Comment: Comment: switchAnalyzeRlist conditions reversed
5 months ago by Trivas ▴ 590
2
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1
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529
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Answer: Answer: Deeptools - removing small clusters
5 months ago by Trivas ▴ 590
0
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0
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531
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Comment: Comment: For the given index number, find which amino acid is present in the given index
5 months ago by Trivas ▴ 590
0
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1
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294
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Best way to make a PCA plot integrating in-house data with public data?
tximport SRA RNA-seq plot PCA
updated 5 months ago by 2.8k • written 5 months ago by ▴ 590
0
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1
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453
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Comment: Comment: PlotPCA shows small plot in plot section of R studio
5 months ago by Trivas ▴ 590
0
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1
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724
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Answer: Answer: Trim Galore Anaconda
5 months ago by Trivas ▴ 590
0
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0
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2.2k
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Comment: Comment: unimplemented type 'list' in 'EncodeElement' error in a Rscript run in Ubuntu te
5 months ago by Trivas ▴ 590
0
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1
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565
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Answer: Answer: Merging different fastq files into one folder
5 months ago by Trivas ▴ 590
0
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0
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293
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Answer: Answer: R Gviz - plot probes against a gene ( not the transcripts, just the gene)
5 months ago by Trivas ▴ 590
0
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0
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260
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Answer: Answer: deeptools heatmap
5 months ago by Trivas ▴ 590
0
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1
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263
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Answer: Answer: how to use mirdeep2 without a small RNA library
5 months ago by Trivas ▴ 590
2
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0
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437
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Comment: Comment: Does comparison between two groups still make sense if PCA plot suggest no diffe
5 months ago by Trivas ▴ 590
2
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0
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535
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Answer: Answer: Concatenate information columns from multiple identical bed files.
5 months ago by Trivas ▴ 590
0
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0
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231
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Comment: Comment: How to change KEGG identifiers to human-read gene names in heatmap function R
5 months ago by Trivas ▴ 590
2
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0
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373
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Comment: Comment: How can I create plot for unique and redundant miRNA using ggplot?
5 months ago by Trivas ▴ 590
1
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1
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373
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Comment: Comment: How can I create plot for unique and redundant miRNA using ggplot?
5 months ago by Trivas ▴ 590
0
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1
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483
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Answer: Answer: Help with adding variables to PCA
6 months ago by Trivas ▴ 590
2
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2
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525
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Answer: Answer: Bam file from STAR
6 months ago by Trivas ▴ 590
0
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0
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525
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Answer: Answer: How to delete all numbers after dot in a column in R?
6 months ago by Trivas ▴ 590
0
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1
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678
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Comment: Comment: Extracting fasta sequence in R
6 months ago by Trivas ▴ 590
0
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2
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926
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Comment: Comment: Convertion of FASTA file to FASTQ file
6 months ago by Trivas ▴ 590
0
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1
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403
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Comment: Comment: plotProfile couldn't generate the heatmap with right color
6 months ago by Trivas ▴ 590
0
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3
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805
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Comment: Comment: DEXSeq - No Exon Counts
6 months ago by Trivas ▴ 590
0
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0
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413
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Comment: Comment: Illumina base space
6 months ago by Trivas ▴ 590
0
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0
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676
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Comment: Comment: Materials and methods in thesis
6 months ago by Trivas ▴ 590
1
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1
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690
views
Comment: Comment: How do you normalize a heat map to the control?
6 months ago by Trivas ▴ 590
0
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1
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690
views
Answer: Answer: How do you normalize a heat map to the control?
6 months ago by Trivas ▴ 590
0
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1
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328
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Comment: Comment: Category or classification a list of genes into exonic, intronic and intergenic
6 months ago by Trivas ▴ 590
133 results • Page 1 of 3
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