User: yliueagle

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yliueagle220
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220
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Location:
France
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1 week, 2 days ago
Joined:
5 years, 3 months ago
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y********@googlemail.com

Posts by yliueagle

<prev • 26 results • page 1 of 3 • next >
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Comment: C: how to find SNP positions (for non-bioinformaticians)
... I think this page answers my question: http://genome.ucsc.edu/goldenPath/newsarch.html Thank you! ...
written 9 days ago by yliueagle220
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Comment: C: how to find SNP positions (for non-bioinformaticians)
... Could you tell what the difference between snp144.txt.gz and snp144Common? The former contains more than 130 million SNPs while snp144Common only contains 14760200 SNPs. Thank you very much! ...
written 9 days ago by yliueagle220
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Comment: C: What's the difference between "hg19" and "hg19 v19"
... Thanks. Will there be a big difference if my focus is on gene expression analysis, between choosing UCSC hg19 and gencode v19? ...
written 4 months ago by yliueagle220
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What's the difference between "hg19" and "hg19 v19"
... In ENCODE, sometimes there are choices of "hg19" and "hg19 v19" when downloading the aligned RNA data. Is there a big difference between these versions? (See here as an example https://www.encodeproject.org/experiments/ENCSR297UBP/) While in GEO, most of the descriptions are like "The reads were fi ...
assembly rna-seq written 4 months ago by yliueagle220
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Comment: C: Hicexplorer error using hicBuildMatrix: no such file as qc_template.html
... Is it possible that I copy qc_template.html to /usr/lib/python2.7/site-packages/hicexplorer/? Thanks ...
written 7 months ago by yliueagle220
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Comment: C: Hicexplorer error using hicBuildMatrix: no such file as qc_template.html
... Hi, Have you found a solution? I also met this problem but do not know how to solve it. Thanks ...
written 7 months ago by yliueagle220
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Gene expression: which allele is considered?
... For human beings, we have two copies of each gene inherited from the parents. The question is, when referring to gene expression, which copy (or allele) is considered? ...
gene expression written 8 months ago by yliueagle220 • updated 8 months ago by Devon Ryan91k
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Why low MAF leads to low power
... For GWAS analysis, why it lacks power for SNPs with low MAF (e.g. <5%)? What's the statistics behind?   ...
maf power snp written 3.9 years ago by yliueagle220 • updated 3.9 years ago by Sam2.4k
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STRING combined score: a bug or else
... I am using the STRING protein interaction database. I have problem of how the combined score of an interaction is calculated. In this reference http://nar.oxfordjournals.org/content/33/suppl_1/D433.long, it stated the combined score S=1-(1-S_1)*...*(1-S_8), where S_i is the score from the ith eviden ...
interaction string protein written 4.1 years ago by yliueagle220
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position range of loci
... A question that how can I obtain the position range of each locus from USCS Genome browser database (assembly GRCh37/hg19)? For example the position range of locus 2q36.3 is chr2:22610000 - 231000000 ...
genome assembly written 4.2 years ago by yliueagle220 • updated 4.2 years ago by Devon Ryan91k

Latest awards to yliueagle

Popular Question 13 months ago, created a question with more than 1,000 views. For Why low MAF leads to low power
Great Question 2.4 years ago, created a question with more than 5,000 views. For DAVID: functional annotation chart result explanation
Great Question 2.4 years ago, created a question with more than 5,000 views. For Map gene name to gene ID
Popular Question 2.4 years ago, created a question with more than 1,000 views. For Why low MAF leads to low power
Popular Question 2.4 years ago, created a question with more than 1,000 views. For DAVID: functional annotation chart result explanation
Popular Question 2.4 years ago, created a question with more than 1,000 views. For GWAS dataset: SNPs with association p-value
Popular Question 2.4 years ago, created a question with more than 1,000 views. For How to group genes as 'gene sets'
Popular Question 2.8 years ago, created a question with more than 1,000 views. For DAVID: functional annotation chart result explanation
Popular Question 2.8 years ago, created a question with more than 1,000 views. For GWAS: low explained heritability
Student 2.8 years ago, asked a question with at least 3 up-votes. For Why do genes have so many synonyms?
Popular Question 3.1 years ago, created a question with more than 1,000 views. For GWAS dataset: SNPs with association p-value
Popular Question 3.1 years ago, created a question with more than 1,000 views. For Why do genes have so many synonyms?
Popular Question 3.4 years ago, created a question with more than 1,000 views. For Why do genes have so many synonyms?
Popular Question 3.4 years ago, created a question with more than 1,000 views. For GWAS dataset: SNPs with association p-value
Appreciated 3.5 years ago, created a post with more than 5 votes. For gene (or SNP) related to a disease
Good Question 3.5 years ago, asked a question that was upvoted at least 5 times. For gene (or SNP) related to a disease
Popular Question 3.5 years ago, created a question with more than 1,000 views. For Why do genes have so many synonyms?
Student 4.5 years ago, asked a question with at least 3 up-votes. For Why do genes have so many synonyms?
Good Question 4.7 years ago, asked a question that was upvoted at least 5 times. For Why do genes have so many synonyms?
Appreciated 4.7 years ago, created a post with more than 5 votes. For Why do genes have so many synonyms?
Student 4.7 years ago, asked a question with at least 3 up-votes. For Why do genes have so many synonyms?

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