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questions
0
votes
2
replies
283
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Biobambam vs Picard in RNA Sequencing Analysis for BAM to FASTQ
RNA-seq
Biobambam
Picard
6 weeks ago by
kcarey
• 0
1
vote
2
replies
575
views
BAM 2 FASTQ using Picard and Samtools
PAIREDENDFASTQ
RNASequencing
BAM
SINGLETONS
8 months ago by
kcarey
• 0
0
votes
4
replies
1.1k
views
RNA Sequencing and Vg pan -transcriptome build
fasta
pan-transcriptome
pan-genome
vg
13 months ago by
kcarey
• 0
4
votes
9
replies
1.2k
views
Aligning fastq files using STAR
RNA
loop
STAR
HG
Sequencing
17 months ago by
kcarey
• 0
0
votes
10
replies
1.9k
views
For loop for aligning multiple paired end fastq files
star
updated 17 months ago by
Ram
43k • written 17 months ago by
kcarey
• 0
0
votes
6
replies
1.1k
views
Having trouble Aligning paired end reads with STAR
RNA
STAR
38
HG
Sequencing
17 months ago by
kcarey
• 0
0
votes
7
replies
944
views
For loop RNA Sequencing alignment
RNA
STAR
updated 10 months ago by
Ram
43k • written 18 months ago by
kcarey
• 0
0
votes
7
replies
725
views
For loop rna sequencing alignment
Star
19 months ago by
kcarey
• 0
0
votes
6
replies
1.7k
views
Converting BAM to FASTQ...to new reference genome
bam
Samtools
STAR
fastq
RNA-Seq
updated 10 months ago by
Ram
43k • written 20 months ago by
kcarey
• 0
2
votes
3
replies
670
views
Does anyone know any packages that test to make sure ribosomal depletion took place? After illumina tru seq protocol
Ribosomal
sequencing
Contimination
RNA
Packages
22 months ago by
kcarey
• 0
0
votes
6
replies
1.1k
views
Ribosomal Depletion
rRNA
STAR
sequencing
contamination
RNA
updated 22 months ago by
andres.firrincieli
3.6k • written 22 months ago by
kcarey
• 0
0
votes
4
replies
1.3k
views
featureCounts
featureCounts
Subread
RNA
Bam
updated 13 months ago by
Ram
43k • written 2.0 years ago by
kcarey
• 0
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