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Answer: Answer: DiffBind normalization error: invalid argument type (list) - cannot make it work
5 months ago by Rory Stark ★ 2.1k
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9
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News: New in DiffBind: dba.plotProfile() - Peak profiles and profile heatmaps
DiffBind ChIP-seq deepTools visualization ATAC-seq
updated 7 months ago by ▴ 20 • written 4.3 years ago by ★ 2.1k
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2.1k
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Comment: Comment: Multi-factor designs in DiffBind
21 months ago by Rory Stark ★ 2.1k
1
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0
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1.4k
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Comment: Comment: Consensus peaksets in DiffBind - conceptual questinos
21 months ago by Rory Stark ★ 2.1k
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1
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1.4k
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Answer: Answer: Consensus peaksets in DiffBind - conceptual questinos
21 months ago by Rory Stark ★ 2.1k
1
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1
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2.1k
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Answer: Answer: Multi-factor designs in DiffBind
21 months ago by Rory Stark ★ 2.1k
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0
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764
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Answer: Answer: CHIPSEQ Analysis , DiffBind Parameters
21 months ago by Rory Stark ★ 2.1k
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0
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1.9k
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Comment: Comment: CHIPSEQ : Cut AND Run , DiffBind Parameters
21 months ago by Rory Stark ★ 2.1k
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0
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8.0k
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Comment: Comment: Which method is the best for using in "dba.count" in Diffbind R package
22 months ago by Rory Stark ★ 2.1k
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1
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1.0k
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Answer: Answer: Diffbind low p-value but high FDR
22 months ago by Rory Stark ★ 2.1k
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1
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3.1k
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Comment: Comment: DiffBind dba.analyze never finishes
22 months ago by Rory Stark ★ 2.1k
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0
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4.9k
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Comment: Comment: Interpret plots from DiffBind
2.1 years ago by Rory Stark ★ 2.1k
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1
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1.3k
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Answer: Answer: The bam file used for DiffBind?
2.1 years ago by Rory Stark ★ 2.1k
2
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1
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1.0k
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Answer: Answer: How to compare peak profiles for a subset of ChIPseq genes
2.1 years ago by Rory Stark ★ 2.1k
2
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1
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11k
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Answer: Answer: Help with DiffBind Generating report-based DBA object... Error: No valid contras
2.1 years ago by Rory Stark ★ 2.1k
1
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1
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4.9k
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Comment: Comment: Interpret plots from DiffBind
2.2 years ago by Rory Stark ★ 2.1k
1
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2
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4.9k
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Comment: Comment: Interpret plots from DiffBind
2.2 years ago by Rory Stark ★ 2.1k
1
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1
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4.9k
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Comment: Comment: Interpret plots from DiffBind
2.2 years ago by Rory Stark ★ 2.1k
1
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1
reply
4.9k
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Comment: Comment: Interpret plots from DiffBind
2.2 years ago by Rory Stark ★ 2.1k
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0
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1.7k
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Answer: Answer: How to interpret chipseq profile plot
2.2 years ago by Rory Stark ★ 2.1k
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0
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840
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Answer: Answer: Profile Plot looks strange
2.2 years ago by Rory Stark ★ 2.1k
2
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0
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1.3k
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Answer: Answer: Sample sheet file for DiffBind
2.2 years ago by Rory Stark ★ 2.1k
2
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1
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4.9k
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Answer: Answer: Interpret plots from DiffBind
2.2 years ago by Rory Stark ★ 2.1k
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1
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3.8k
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Comment: Comment: DiffBind reports no significant differentially enriched peaks
2.2 years ago by Rory Stark ★ 2.1k
2
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1
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1.8k
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Answer: Answer: Diff Bind Questions
2.3 years ago by Rory Stark ★ 2.1k
2
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1
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1.5k
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Answer: Answer: CHiP-Seq Questions
2.3 years ago by Rory Stark ★ 2.1k
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0
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8.0k
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Comment: Comment: Which method is the best for using in "dba.count" in Diffbind R package
2.3 years ago by Rory Stark ★ 2.1k
0
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0
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1.3k
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Answer: Answer: Diffbind not calling sites as differentially bound
2.3 years ago by Rory Stark ★ 2.1k
1
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0
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995
views
Answer: Answer: Positive and negative value fold value in ATAC seq using DiffBind
2.4 years ago by Rory Stark ★ 2.1k
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0
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3.6k
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Comment: Comment: Diffbind dba.count doesn't give FRiP score
2.3 years ago by Rory Stark ★ 2.1k
2
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1
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3.6k
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Answer: Answer: Diffbind dba.count doesn't give FRiP score
2.5 years ago by Rory Stark ★ 2.1k
0
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1
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3.6k
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Comment: Comment: Diffbind dba.count doesn't give FRiP score
2.5 years ago by Rory Stark ★ 2.1k
1
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0
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4.3k
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Comment: Comment: DiffBind missing peaks and FRiP
2.5 years ago by Rory Stark ★ 2.1k
1
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1
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3.6k
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Comment: Comment: Diffbind dba.count doesn't give FRiP score
2.5 years ago by Rory Stark ★ 2.1k
0
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0
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4.3k
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Comment: Comment: DiffBind missing peaks and FRiP
2.5 years ago by Rory Stark ★ 2.1k
1
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1
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3.6k
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Answer: Answer: Diffbind dba.count doesn't give FRiP score
2.5 years ago by Rory Stark ★ 2.1k
2
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1
reply
2.2k
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Answer: Answer: Diffbind: how to get raw read counts and normalized read counts
2.5 years ago by Rory Stark ★ 2.1k
1
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0
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3.8k
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Answer: Answer: DiffBind reports no significant differentially enriched peaks
2.5 years ago by Rory Stark ★ 2.1k
3
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0
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2.0k
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Answer: Answer: Chip-seq Analysis
2.6 years ago by Rory Stark ★ 2.1k
0
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0
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2.2k
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Comment: Comment: DiffBind analysis report gives me two different outputs depending on when I appl
2.6 years ago by Rory Stark ★ 2.1k
1
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1
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1.2k
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Answer: Answer: Strange results from Diffbind-Deseq2 differential peak binding of cfChip-seq wit
updated 2.6 years ago by 45k • written 2.6 years ago by ★ 2.1k
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0
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1.6k
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Answer: Answer: Pipeline for quantitative ATAC-seq
2.6 years ago by Rory Stark ★ 2.1k
0
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0
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3.0k
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Answer: Answer: DiffBind error: No contrasts added. There must be at least two sample groups wit
2.8 years ago by Rory Stark ★ 2.1k
0
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0
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2.1k
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Answer: Answer: RiP RLE normalisation using spike-in peaks in DiffBind for ChIP-seq
2.8 years ago by Rory Stark ★ 2.1k
0
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0
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4.3k
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Comment: Comment: DiffBind dba.count() BiocParallel error
2.8 years ago by Rory Stark ★ 2.1k
1
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1
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1.8k
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Answer: Answer: Diffbind raw read counts
2.9 years ago by Rory Stark ★ 2.1k
0
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0
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2.0k
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Comment: Comment: How to extract binding affinity matrix in Diffbind
2.9 years ago by Rory Stark ★ 2.1k
0
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1
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2.0k
views
Answer: Answer: How to extract binding affinity matrix in Diffbind
2.9 years ago by Rory Stark ★ 2.1k
0
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1
reply
6.2k
views
Comment: Comment: New in DiffBind: dba.plotProfile() - Peak profiles and profile heatmaps
3.0 years ago by Rory Stark ★ 2.1k
2
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0
replies
5.1k
views
Answer: Answer: ChIPQC BiocParallel errors
3.1 years ago by Rory Stark ★ 2.1k
195 results • Page 1 of 4
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