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2
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2
replies
2.2k
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Answer: A: how matrix composition influences the final results in diff bind
5.0 years ago by Rory Stark ★ 2.1k
0
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0
replies
1.7k
views
Answer: A: Comparing peaks between multiple samples
5.1 years ago by Rory Stark ★ 2.1k
0
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1
reply
1.7k
views
Answer: A: Comparing peaks between multiple samples
5.1 years ago by Rory Stark ★ 2.1k
0
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0
replies
1.6k
views
Answer: A: diffBind dba.count error for a peaks file selected
5.2 years ago by Rory Stark ★ 2.1k
2
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1
reply
2.2k
views
Answer: A: Extract RPKM values from Diffbind
5.2 years ago by Rory Stark ★ 2.1k
1
vote
0
replies
2.0k
views
Comment: C: DiffBind gives peaks of different widths, even when setting "summits"
5.2 years ago by Rory Stark ★ 2.1k
2
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0
replies
1.4k
views
Answer: A: are there some tools or software can find the different peak of ATAC-seq
5.2 years ago by Rory Stark ★ 2.1k
2
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1
reply
2.2k
views
Answer: A: Extract RPKM values from Diffbind
5.2 years ago by Rory Stark ★ 2.1k
0
votes
0
replies
1.3k
views
Answer: A: why DiffBind, diffferentially binding site is the for different samples
5.2 years ago by Rory Stark ★ 2.1k
1
vote
0
replies
3.4k
views
Answer: A: How to make complex contrasts in DiffBind dba.contrast
5.2 years ago by Rory Stark ★ 2.1k
2
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1
reply
2.0k
views
Answer: A: DiffBind gives peaks of different widths, even when setting "summits"
5.2 years ago by Rory Stark ★ 2.1k
0
votes
0
replies
4.8k
views
Comment: C: Difference of DiffBind library size normalisation vs DESeq2 library size normali
5.3 years ago by Rory Stark ★ 2.1k
0
votes
3
replies
7.8k
views
Answer: A: DiffBind error when calling dba.count
5.3 years ago by Rory Stark ★ 2.1k
2
votes
2
replies
4.8k
views
Answer: A: Difference of DiffBind library size normalisation vs DESeq2 library size normali
5.4 years ago by Rory Stark ★ 2.1k
1
vote
0
replies
1.6k
views
Answer: A: Obtained too many chip-seq peaks after diffbind, how to set a criteria to select
5.4 years ago by Rory Stark ★ 2.1k
1
vote
2
replies
1.9k
views
Answer: A: Error while invoking. dba.analyze() in DiffBind
5.4 years ago by Rory Stark ★ 2.1k
0
votes
1
reply
2.7k
views
Answer: A: ChIP seq: Trying to use ChIPQC to measure quality of reads
5.4 years ago by Rory Stark ★ 2.1k
1
vote
1
reply
2.8k
views
Answer: A: Diffbind-edgeR or Deseq2
5.5 years ago by Rory Stark ★ 2.1k
0
votes
0
replies
2.3k
views
Answer: A: Calculate correlations between ChipSeq data sets
5.5 years ago by Rory Stark ★ 2.1k
1
vote
2
replies
8.0k
views
Answer: A: Which method is the best for using in "dba.count" in Diffbind R package
5.9 years ago by Rory Stark ★ 2.1k
3
votes
1
reply
5.2k
views
Answer: A: Are MACS2's summit or DiffBind's summit options are recommended for histone mark
6.0 years ago by Rory Stark ★ 2.1k
0
votes
0
replies
2.0k
views
Answer: A: DiffBind package showing warnings and unable to analyse my data
6.2 years ago by Rory Stark ★ 2.1k
0
votes
0
replies
1.0k
views
Answer: A: Diffbind affinity based analysis
6.3 years ago by Rory Stark ★ 2.1k
1
vote
1
reply
4.4k
views
Answer: A: how to retrieve binding affinity matrix in diffbind
6.5 years ago by Rory Stark ★ 2.1k
1
vote
2
replies
10.0k
views
Comment: C: DiffBind: Error in `.rowNamesDF<-`(x, value = value) : invalid 'row.names' lengt
6.5 years ago by Rory Stark ★ 2.1k
0
votes
0
replies
1.6k
views
Answer: A: create a RC matrix with narrowPeak data
7.1 years ago by Rory Stark ★ 2.1k
1
vote
1
reply
3.3k
views
Answer: A: How to correlate chip seq peaks?
7.2 years ago by Rory Stark ★ 2.1k
0
votes
0
replies
3.2k
views
Comment: C: question about DiffBind
7.2 years ago by Rory Stark ★ 2.1k
14
votes
1
reply
6.6k
views
Answer: A: Diffbind for ATAC-seq data with no controls
7.3 years ago by Rory Stark ★ 2.1k
4
votes
1
reply
5.3k
views
Answer: A: Diffbind - Very high proportion of significant peaks
7.4 years ago by Rory Stark ★ 2.1k
0
votes
0
replies
3.3k
views
Answer: A: Diffbind error : sequences from an unspecified genome; no seqlengths
7.4 years ago by Rory Stark ★ 2.1k
6
votes
3
replies
7.0k
views
Answer: A: What is the best method ChIPseq differential binding analysis?
7.6 years ago by Rory Stark ★ 2.1k
0
votes
1
reply
3.3k
views
Comment: C: DiffBind - Erroneous Affinity Shift In One Direction
7.6 years ago by Rory Stark ★ 2.1k
1
vote
2
replies
3.3k
views
Answer: A: DiffBind - Erroneous Affinity Shift In One Direction
7.6 years ago by Rory Stark ★ 2.1k
1
vote
0
replies
2.2k
views
Answer: A: Diffbind package DESeq2 analysis
7.7 years ago by Rory Stark ★ 2.1k
6
votes
1
reply
6.1k
views
Answer: A: Huge difference between differential peaks with EdgeR and DESeq2 using Diffbind
7.9 years ago by Rory Stark ★ 2.1k
3
votes
1
reply
4.6k
views
Answer: A: [How to Save plots in R] DiffBind
8.0 years ago by Rory Stark ★ 2.1k
7
votes
1
reply
15k
views
Answer: A: Visualization for ChIP-seq analysis
8.0 years ago by Rory Stark ★ 2.1k
2
votes
0
replies
4.8k
views
Answer: A: Convert DiffBind output to standard BED or NarrowPeak format
8.0 years ago by Rory Stark ★ 2.1k
4
votes
2
replies
8.8k
views
Answer: A: How many biological replicates needed for ChIP seq experiments?
8.0 years ago by Rory Stark ★ 2.1k
3
votes
1
reply
15k
views
Answer: A: Converting narrowPeak to bed
8.0 years ago by Rory Stark ★ 2.1k
1
vote
1
reply
2.7k
views
Answer: A: Comparison of ChIPseq enrichment in specific regions
8.4 years ago by Rory Stark ★ 2.1k
11
votes
2
replies
5.9k
views
Tool: ChIPQC: a package for assessing quality of ChIP-seq samples and experiments
quality-control quality-assessment ChIP-Seq
updated 2.2 years ago by 45k • written 11.4 years ago by ★ 2.1k
5
votes
0
replies
7.5k
views
Answer: A: Chips-Seq Replicates And Motif Discovery: What Is The Most Sound Way To Deal Wit
11.4 years ago by Rory Stark ★ 2.1k
0
votes
0
replies
5.6k
views
Comment: C: Replicates In Chip-Seq
11.4 years ago by Rory Stark ★ 2.1k
195 results • Page 4 of 4
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