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Comment:
Comment: ANOVA results viz from ssGSEA
2.5 years ago by
LChart
5.1k
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1.8k
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Answer:
Answer: Big BCV (Biological Coefficient of Variation) - no sense to continue the analysi
2.5 years ago by
LChart
5.1k
2
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0
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1.0k
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Answer:
Answer: Controlling for FDR in 450k methylation microarray data
2.5 years ago by
LChart
5.1k
3
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0
replies
1.4k
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Answer:
Answer: Choosing the correct shrinkage type
2.5 years ago by
LChart
5.1k
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0
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1.6k
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Comment:
Comment: How to combine different "groups" in DESeq2 constrast
2.5 years ago by
LChart
5.1k
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1.6k
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Answer:
Answer: How to combine different "groups" in DESeq2 constrast
2.5 years ago by
LChart
5.1k
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1.2k
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Answer:
Answer: How is module-trait association calculated in WGCNA?
2.5 years ago by
LChart
5.1k
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0
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879
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Answer:
Answer: A bioinformatics query script written in Python
2.5 years ago by
LChart
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0
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1.2k
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Comment:
Comment: Secondary Filtering of DE Results to Eliminate Lowly-Expressed Transcripts
2.5 years ago by
LChart
5.1k
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1.5k
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Answer:
Answer: Chromosome "whole genome shotgun sequence" not found
2.5 years ago by
LChart
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0
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6.9k
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Comment:
Comment: Batch effect in integrated RNA-seq analysis
2.5 years ago by
LChart
5.1k
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2
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1.8k
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Comment:
Comment: Dependent p values
2.5 years ago by
LChart
5.1k
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2.4k
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Comment:
Comment: Advices on Box-Cox transformation (powerTransform function) before UMAP clusteri
2.5 years ago by
LChart
5.1k
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6.9k
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Comment:
Comment: Batch effect in integrated RNA-seq analysis
2.5 years ago by
LChart
5.1k
1
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1.7k
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Comment:
Comment: Check my understanding - difference between number of reads sequenced and Seurat
2.5 years ago by
LChart
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2
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1.8k
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Comment:
Comment: Dependent p values
2.5 years ago by
LChart
5.1k
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1
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3.1k
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Comment:
Comment: Getting matrix of QDs from VCF file
2.5 years ago by
LChart
5.1k
1
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0
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894
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Comment:
Comment: intron retention length detected by short read > long read
2.5 years ago by
LChart
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2
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1.3k
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Answer:
Answer: Summarizing permutation test/ bootstrap result for multiple samples for single-
2.5 years ago by
LChart
5.1k
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1
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3.1k
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Comment:
Comment: Getting matrix of QDs from VCF file
2.5 years ago by
LChart
5.1k
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0
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1.5k
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Answer:
Answer: Z-score difference between Z group means
2.5 years ago by
LChart
5.1k
1
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1
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1.8k
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Answer:
Answer: Dependent p values
2.5 years ago by
LChart
5.1k
1
vote
1
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1.2k
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Answer:
Answer: Secondary Filtering of DE Results to Eliminate Lowly-Expressed Transcripts
2.5 years ago by
LChart
5.1k
2
votes
0
replies
1.3k
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Answer:
Answer: What is the purpose of Zero Inflated Models in single cell RNAseq
2.5 years ago by
LChart
5.1k
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0
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2.6k
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Comment:
Comment: GATK4.3 ApplyBQSR
2.5 years ago by
LChart
5.1k
1
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1
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2.4k
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Comment:
Comment: Advices on Box-Cox transformation (powerTransform function) before UMAP clusteri
2.5 years ago by
LChart
5.1k
1
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0
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2.4k
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Comment:
Comment: Advices on Box-Cox transformation (powerTransform function) before UMAP clusteri
2.5 years ago by
LChart
5.1k
1
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1
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2.4k
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Comment:
Comment: Advices on Box-Cox transformation (powerTransform function) before UMAP clusteri
2.5 years ago by
LChart
5.1k
0
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0
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2.6k
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Comment:
Comment: GATK4.3 ApplyBQSR
2.5 years ago by
LChart
5.1k
0
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1
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2.6k
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Answer:
Answer: GATK4.3 ApplyBQSR
2.5 years ago by
LChart
5.1k
0
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1
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1.8k
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Comment:
Comment: ANOVA results viz from ssGSEA
2.5 years ago by
LChart
5.1k
0
votes
1
reply
1.8k
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Answer:
Answer: ANOVA results viz from ssGSEA
2.5 years ago by
LChart
5.1k
0
votes
1
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6.9k
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Comment:
Comment: Batch effect in integrated RNA-seq analysis
2.5 years ago by
LChart
5.1k
0
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0
replies
799
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Answer:
Answer: Calculating Log of the odds (LOD) from Matrix eQTL output
2.5 years ago by
LChart
5.1k
2
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0
replies
1.1k
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Answer:
Answer: Which reference transcriptome/genome to use for mus musculus if I know the parti
2.5 years ago by
LChart
5.1k
0
votes
1
reply
826
views
Answer:
Answer: Perform Plink association tests on a genetype file with one allele
2.5 years ago by
LChart
5.1k
0
votes
0
replies
817
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Answer:
Answer: overlay ggplot graphs like those merging channels in imagej
2.6 years ago by
LChart
5.1k
1
vote
0
replies
781
views
Comment:
Comment: Obtain information from a filtered VCF file
2.6 years ago by
LChart
5.1k
0
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1
reply
12k
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Comment:
Comment: making a BIGWIG from BAM file
2.6 years ago by
LChart
5.1k
1
vote
1
reply
12k
views
Answer:
Answer: making a BIGWIG from BAM file
2.6 years ago by
LChart
5.1k
0
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1
reply
13k
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Comment:
Comment: conda create env using .yml file leads to dependency conflicts
2.6 years ago by
LChart
5.1k
1
vote
1
reply
752
views
Answer:
Answer: Filter out pct.2 <0.5
2.6 years ago by
LChart
5.1k
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0
replies
1.4k
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Answer:
Answer: MACS to Signac
2.6 years ago by
LChart
5.1k
0
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1
reply
1.2k
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Comment:
Comment: R error
2.6 years ago by
LChart
5.1k
1
vote
0
replies
901
views
Comment:
Comment: Bioinformatics recursion practical applications
2.6 years ago by
LChart
5.1k
0
votes
1
reply
4.2k
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Comment:
Comment: Can't liftover vcf file from hg19 to hg38
updated 2.6 years ago by
Ram
45k • written 2.6 years ago by
LChart
5.1k
0
votes
0
replies
924
views
Comment:
Comment: Can you apply Base Score Recalibration in parallel?
2.6 years ago by
LChart
5.1k
2
votes
1
reply
1.7k
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Comment:
Comment: Reads are marked as full of mismatches in IGV, but cigar string shows full lengt
2.6 years ago by
LChart
5.1k
2
votes
1
reply
1.5k
views
Answer:
Answer: Plotting Correlation matrix
2.6 years ago by
LChart
5.1k
1
vote
0
replies
3.8k
views
Comment:
Comment: BULK mRNA-seq with UMIs. Do I need to normalize by gene length?
2.6 years ago by
LChart
5.1k
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