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Comment: C: Different PCA plots using rlog and vsd on the same data set
6.6 years ago by Michael Love ★ 2.6k
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1
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4.1k
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Comment: C: Changes to dispersion estimates in DESeq2?
6.6 years ago by Michael Love ★ 2.6k
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0
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2.8k
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Comment: C: Efficient way to run a DESeq2 analysis with many design formulae
6.6 years ago by Michael Love ★ 2.6k
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2.8k
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Comment: C: Efficient way to run a DESeq2 analysis with many design formulae
6.6 years ago by Michael Love ★ 2.6k
3
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1
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2.8k
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Answer: A: Efficient way to run a DESeq2 analysis with many design formulae
6.7 years ago by Michael Love ★ 2.6k
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1
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5.0k
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Comment: C: Why DESeq2 in parallel mode is slower than normal?!
6.9 years ago by Michael Love ★ 2.6k
2
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1
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5.0k
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Answer: A: Why DESeq2 in parallel mode is slower than normal?!
6.9 years ago by Michael Love ★ 2.6k
2
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0
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1.9k
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Comment: C: Verification of Global Reduction of Epigenetic Factors ?
6.9 years ago by Michael Love ★ 2.6k
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1.2k
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Comment: C: Is the VST implemented in DESeq useful on time-series cell differentiation datas
7.1 years ago by Michael Love ★ 2.6k
2
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0
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4.0k
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Answer: A: How to define a non differentially expressed gene?
7.1 years ago by Michael Love ★ 2.6k
3
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1
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4.4k
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Comment: C: What problem does the MA plot diagnose? And how do you solve it?
7.2 years ago by Michael Love ★ 2.6k
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0
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4.5k
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Answer: A: DESeq2 - how to build design for multiple paired samples before/after with 2 con
7.2 years ago by Michael Love ★ 2.6k
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0
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3.2k
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Answer: A: DESeqDataSetFromMatrix Error in if/while (condition) {: missing Value where TRUE
7.4 years ago by Michael Love ★ 2.6k
3
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1
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1.6k
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Answer: C: Coping with a label imbalance in DESeq2
7.6 years ago by Michael Love ★ 2.6k
3
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1
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45k
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Answer: A: Up-to-date RNA-Seq Analysis Training/Courses/Papers (July 2016)
7.8 years ago by Michael Love ★ 2.6k
0
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0
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4.3k
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Comment: C: why my resultsNames(deseq) is not the same as model.matrix ?
7.8 years ago by Michael Love ★ 2.6k
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0
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2.4k
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Comment: C: Skip estimateDispersion() DESeq2
7.9 years ago by Michael Love ★ 2.6k
0
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0
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3.2k
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Comment: C: What the Color is in heatmap for time series analysis
7.9 years ago by Michael Love ★ 2.6k
0
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0
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1.4k
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Comment: C: Check if RNASeq count data follow NB or Poisson distributions
7.9 years ago by Michael Love ★ 2.6k
4
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0
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3.0k
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News: New simulation dataset for 'A benchmark for RNA-seq quantification pipelines'
RNA-Seq
updated 13 months ago by 43k • written 7.9 years ago by ★ 2.6k
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0
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2.6k
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Answer: A: The best test for the two conditional problem.
8.0 years ago by Michael Love ★ 2.6k
0
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0
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3.3k
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Answer: A: clustering from breast cancer RNA-seq data
8.0 years ago by Michael Love ★ 2.6k
3
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0
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8.7k
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Comment: C: Time course experiments in DESeq2
8.0 years ago by Michael Love ★ 2.6k
3
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3
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8.7k
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Comment: C: Time course experiments in DESeq2
8.0 years ago by Michael Love ★ 2.6k
2
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0
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8.7k
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Comment: C: Time course experiments in DESeq2
8.0 years ago by Michael Love ★ 2.6k
3
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1
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8.7k
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Comment: C: Time course experiments in DESeq2
8.0 years ago by Michael Love ★ 2.6k
2
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0
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8.7k
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Answer: A: Time course experiments in DESeq2
8.0 years ago by Michael Love ★ 2.6k
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0
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5.1k
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Comment: C: Using 'tximport' library for downstream DGE after quantifying with Kallisto
8.0 years ago by Michael Love ★ 2.6k
0
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0
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8.2k
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Comment: C: following Kallisto with DESeq2 using tximport package
8.0 years ago by Michael Love ★ 2.6k
2
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1
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5.1k
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Answer: A: Using 'tximport' library for downstream DGE after quantifying with Kallisto
8.0 years ago by Michael Love ★ 2.6k
2
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1
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2.6k
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Comment: C: Error in Transcript to gene level estimation using "Genesum" package
8.1 years ago by Michael Love ★ 2.6k
18
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1
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36k
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Answer: A: Transcript to gene level count for DEseq(2) use- Salmon/Sailfish/Kallisto etc.
8.1 years ago by Michael Love ★ 2.6k
2
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1
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8.2k
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Answer: A: following Kallisto with DESeq2 using tximport package
8.2 years ago by Michael Love ★ 2.6k
1
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0
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4.7k
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Answer: A: Shrinking fold change and dispersion for RNA-seq data ( DESeq2)
8.6 years ago by Michael Love ★ 2.6k
5
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0
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4.8k
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Answer: A: Why is DESeq a better method for finding highly upregulated and downregulated ge
8.8 years ago by Michael Love ★ 2.6k
2
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0
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13k
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Comment: C: Deseq2 gene name annotation
8.8 years ago by Michael Love ★ 2.6k
1
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1
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13k
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Answer: A: Deseq2 gene name annotation
8.8 years ago by Michael Love ★ 2.6k
1
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0
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2.7k
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Answer: A: Running DESeqDataSet with 4 factors?
8.8 years ago by Michael Love ★ 2.6k
0
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0
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10k
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Comment: A: RNA-seq Anova on three groups
8.8 years ago by Michael Love ★ 2.6k
1
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0
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3.4k
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Comment: A: DESeq pvalue>0.05 qvalue=1
8.8 years ago by Michael Love ★ 2.6k
0
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0
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4.5k
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Answer: Answer: Deseq web-based (with GUI)
updated 17 months ago by 43k • written 8.8 years ago by ★ 2.6k
3
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1
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9.8k
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Answer: Answer: How to remove batch effect from RNA-seq data?
updated 17 months ago by 43k • written 8.8 years ago by ★ 2.6k
5
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0
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4.9k
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Answer: A: DESeq2: different log2FC results when using subset of data
8.8 years ago by Michael Love ★ 2.6k
2
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0
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1.5k
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Answer: A: Summarized Experiment _normrange
8.8 years ago by Michael Love ★ 2.6k
4
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0
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12k
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Answer: Answer: DESeq2 - "all gene-wise dispersion estimates are within 2 orders of magnitude"
updated 17 months ago by 43k • written 8.8 years ago by ★ 2.6k
4
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1
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7.6k
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Answer: Answer: DESeq2 analysis: huge number of outliers and refitting
updated 17 months ago by 43k • written 8.8 years ago by ★ 2.6k
2
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0
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3.2k
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Comment: Comment: QuasiSeq vs. DESeq2 results
updated 16 months ago by 43k • written 8.9 years ago by ★ 2.6k
0
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1
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27k
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Comment: C: DESeq2 : three factor conditions
updated 3.1 years ago by 43k • written 9.0 years ago by ★ 2.6k
6
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1
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11k
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Answer: Answer: fold change vs standardized effect size
updated 15 months ago by 43k • written 9.0 years ago by ★ 2.6k
1
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2
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3.0k
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Answer: Answer: DESeq2 - Warning message
updated 15 months ago by 43k • written 9.0 years ago by ★ 2.6k
131 results • Page 2 of 3
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