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Answer: A: VCFtools not filtering VCF file by positions
updated 5.3 years ago by 45k • written 9.4 years ago by ▴ 770
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Answer: A: ANNOVAR is losing 886 SNPs, and I can't figure out why
7.9 years ago by devenvyas ▴ 770
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Answer: A: How to call mitochondrial SNP?
7.9 years ago by devenvyas ▴ 770
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Answer: A: Good way to graph allele frequency of different SNPs along chromosomes
8.6 years ago by devenvyas ▴ 770
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Answer: A: Good repository for uploading SNP data (from genotyping array) alongside manuscr
8.6 years ago by devenvyas ▴ 770
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Answer: A: How to compare Neanderthal ancestry blocks between two sets of populations using
8.7 years ago by devenvyas ▴ 770
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6.7k
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Answer: A: Updating dbSNP rs ids from old SNP data
9.6 years ago by devenvyas ▴ 770
4
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13k
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Answer: Answer: What is a bad GATK Genotype Quality?
updated 2.3 years ago by 45k • written 9.7 years ago by ▴ 770
4
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0
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2.4k
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Answer: Answer: Merging datasets from different arrays - need quick way to generate the intersec
updated 2.3 years ago by 45k • written 9.8 years ago by ▴ 770
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4.8k
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Answer: C: Two Plink map/ped files refuse to merge.
9.8 years ago by devenvyas ▴ 770
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Answer: Answer: Need code to filter VCF files based on rsid using Pysam
updated 3.0 years ago by 45k • written 10.2 years ago by ▴ 770
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3.2k
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Answer: A: Protocol for calling SNPs from a large number of BAM files
10.6 years ago by devenvyas ▴ 770
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