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Comment: Comment: Realigning BAM files to new reference
8 months ago by devenvyas ▴ 770
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2.8k
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Comment: Comment: How do I filter a multi-individual BCF file for genotype probabilities
2.2 years ago by devenvyas ▴ 770
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2.8k
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Comment: Comment: How do I filter a multi-individual BCF file for genotype probabilities
2.2 years ago by devenvyas ▴ 770
0
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1
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2.2k
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Comment: Comment: Cannot download BAMs from SRA AWS
2.9 years ago by devenvyas ▴ 770
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2.2k
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Comment: Comment: Cannot download BAMs from SRA AWS
2.9 years ago by devenvyas ▴ 770
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0
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3.8k
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Comment: C: Plot local ancestry on chromosome
5.0 years ago by devenvyas ▴ 770
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0
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4.7k
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Comment: C: Help needed parsing VCF files
updated 5.2 years ago by 45k • written 10.8 years ago by ▴ 770
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1
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3.9k
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Comment: C: Scatter plot when there is a standard error for both axes
updated 5.2 years ago by 45k • written 9.2 years ago by ▴ 770
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0
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2.7k
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Comment: C: Extracting SNP data for specific rs#s from published genome sequences
updated 5.2 years ago by 45k • written 10.9 years ago by ▴ 770
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1
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2.2k
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Comment: C: Good way of plotting a statistic with error bars
updated 5.3 years ago by 45k • written 9.2 years ago by ▴ 770
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0
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6.7k
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Comment: C: Updating dbSNP rs ids from old SNP data
updated 5.3 years ago by 45k • written 9.6 years ago by ▴ 770
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1
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4.6k
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Comment: A: How to obtain ancestral alleles based on Hg19 genome coordinates?
updated 5.3 years ago by 45k • written 9.4 years ago by ▴ 770
1
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1
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5.1k
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Comment: C: New to SNP data: I need help getting Affy Axiom data out of genotyping console i
updated 5.3 years ago by 45k • written 9.4 years ago by ▴ 770
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1
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2.1k
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Comment: C: Clipping reads within BAM files?
5.4 years ago by devenvyas ▴ 770
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2.2k
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Comment: C: Merging sets of autosomal SNPs from the same array, but I am losing ~50,000 SNPs
updated 5.4 years ago by 45k • written 9.7 years ago by ▴ 770
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2.2k
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Comment: C: Merging sets of autosomal SNPs from the same array, but I am losing ~50,000 SNPs
updated 5.4 years ago by 45k • written 9.7 years ago by ▴ 770
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0
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4.6k
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Comment: C: Large tab-delimited table of SNP data, how to filter out some rows based on rsID
updated 5.4 years ago by 45k • written 9.8 years ago by ▴ 770
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4.6k
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Comment: C: Need good way to run a Principle Component Analysis on SNP data
updated 5.4 years ago by 45k • written 9.8 years ago by ▴ 770
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0
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4.3k
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Comment: C: Problems with vcf-merge
updated 5.8 years ago by 45k • written 10.9 years ago by ▴ 770
0
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1
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15k
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Comment: C: Generating an ADMIXTURE plot that stacks the different values of K using R
updated 6.5 years ago by 45k • written 9.1 years ago by ▴ 770
0
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0
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15k
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Comment: C: Generating an ADMIXTURE plot that stacks the different values of K using R
updated 6.5 years ago by 45k • written 9.1 years ago by ▴ 770
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0
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3.0k
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Comment: C: ANNOVAR is losing 886 SNPs, and I can't figure out why
7.9 years ago by devenvyas ▴ 770
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1
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3.0k
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Comment: C: ANNOVAR is losing 886 SNPs, and I can't figure out why
7.9 years ago by devenvyas ▴ 770
0
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1
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3.0k
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Comment: C: ANNOVAR is losing 886 SNPs, and I can't figure out why
7.9 years ago by devenvyas ▴ 770
0
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1
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3.4k
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Comment: C: Where can I upload SNP array data for public accessibility?
8.4 years ago by devenvyas ▴ 770
0
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1
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3.4k
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Comment: C: Where can I upload SNP array data for public accessibility?
8.4 years ago by devenvyas ▴ 770
0
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1
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3.4k
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Comment: C: Where can I upload SNP array data for public accessibility?
8.4 years ago by devenvyas ▴ 770
0
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1
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3.4k
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Comment: C: Where can I upload SNP array data for public accessibility?
8.4 years ago by devenvyas ▴ 770
0
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1
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3.4k
views
Comment: C: Where can I upload SNP array data for public accessibility?
8.4 years ago by devenvyas ▴ 770
1
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1
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3.4k
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Comment: C: Why can't we downvote on this forum?
8.4 years ago by devenvyas ▴ 770
0
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0
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3.7k
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Comment: C: Getting p-values for whether the allele frequencies from two or more populations
8.6 years ago by devenvyas ▴ 770
0
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1
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3.7k
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Comment: C: Getting p-values for whether the allele frequencies from two or more populations
8.6 years ago by devenvyas ▴ 770
0
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1
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1.5k
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Comment: C: Figuring out which genes a set of SNPs overlap with
8.6 years ago by devenvyas ▴ 770
0
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1
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3.7k
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Comment: C: Getting p-values for whether the allele frequencies from two or more populations
8.6 years ago by devenvyas ▴ 770
0
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0
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6.8k
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Comment: C: Good way to graph allele frequency of different SNPs along chromosomes
8.6 years ago by devenvyas ▴ 770
1
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0
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3.2k
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Comment: C: Making a neighbor-joining tree of human populations based on mitochondrial DNA
8.6 years ago by devenvyas ▴ 770
0
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0
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5.6k
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Comment: C: How does Plink choose which SNP is Allele1 and Allele2?
8.6 years ago by devenvyas ▴ 770
0
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0
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5.6k
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Comment: C: How does Plink choose which SNP is Allele1 and Allele2?
8.6 years ago by devenvyas ▴ 770
0
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1
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2.7k
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Comment: A: Where do you cite R packages such as ggmap in a manuscript?
8.6 years ago by devenvyas ▴ 770
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0
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2.7k
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Comment: C: Good repository for uploading SNP data (from genotyping array) alongside manuscr
8.6 years ago by devenvyas ▴ 770
0
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0
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1.9k
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Comment: A: Good text or video explaining what sequence alignment is to an undergrad
8.7 years ago by devenvyas ▴ 770
1
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0
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15k
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Comment: C: Generating an ADMIXTURE plot that stacks the different values of K using R
8.7 years ago by devenvyas ▴ 770
0
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0
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2.3k
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Comment: C: What are good settings to filter VCF files to merge SNP data with SNP array data
8.9 years ago by devenvyas ▴ 770
0
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0
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4.2k
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Comment: C: Why is my ADMIXTURE random seed always 43
9.2 years ago by devenvyas ▴ 770
0
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1
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3.9k
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Comment: C: Scatter plot when there is a standard error for both axes
9.2 years ago by devenvyas ▴ 770
0
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0
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2.5k
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Comment: C: Perplexing ADMIXTURE results - one component present at K =10 disappears at 11,
9.2 years ago by devenvyas ▴ 770
0
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1
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2.2k
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Comment: C: Good way of plotting a statistic with error bars
9.2 years ago by devenvyas ▴ 770
0
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0
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2.4k
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Comment: C: Filtering down 1000 Genomes data just for a set of SNPs
9.4 years ago by devenvyas ▴ 770
0
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0
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2.2k
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Comment: C: Good way of obtaining Human-Chimp ancestral genotypes?
9.4 years ago by devenvyas ▴ 770
0
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0
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5.1k
views
Comment: C: New to SNP data: I need help getting Affy Axiom data out of genotyping console i
9.4 years ago by devenvyas ▴ 770
105 results • Page 1 of 3
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