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4
votes
0
replies
4.3k
views
Answer: A: Salmon libType is required but missing, although I thought I supplied it
8.3 years ago by Rob 7.2k
1
vote
0
replies
1.6k
views
Comment: C: tophat 2 rna seq
8.4 years ago by Rob 7.2k
2
votes
0
replies
3.0k
views
Answer: A: Getting this message in SALMON's log file:""Greater than 5% of the fragments dis
8.4 years ago by Rob 7.2k
2
votes
0
replies
2.9k
views
Answer: A: salmon, kallisto psuedoaligners are failing to process
8.4 years ago by Rob 7.2k
1
vote
1
reply
2.8k
views
Answer: A: combine or split, that's a question for transcriptome assembly
8.4 years ago by Rob 7.2k
11
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0
replies
9.7k
views
Answer: A: Effective length in normalisation for reads counts
8.5 years ago by Rob 7.2k
1
vote
1
reply
11k
views
Comment: C: Converting TPM to FPKM
8.5 years ago by Rob 7.2k
1
vote
1
reply
4.3k
views
Comment: C: Looking for advice on making a grad school decision on bioinformatics/computatio
8.6 years ago by Rob 7.2k
1
vote
1
reply
4.3k
views
Answer: A: Looking for advice on making a grad school decision on bioinformatics/computatio
8.6 years ago by Rob 7.2k
1
vote
1
reply
5.1k
views
Comment: C: How is the FM-index built for multiple entries of a fasta file?
8.6 years ago by Rob 7.2k
0
votes
1
reply
2.9k
views
Comment: C: More specifics on Jellyfish -C methodology.
8.6 years ago by Rob 7.2k
2
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1
reply
2.9k
views
Answer: A: More specifics on Jellyfish -C methodology.
8.6 years ago by Rob 7.2k
0
votes
1
reply
5.1k
views
Answer: A: How is the FM-index built for multiple entries of a fasta file?
8.6 years ago by Rob 7.2k
3
votes
1
reply
5.5k
views
Answer: A: Correct for GC content bias RNASeq DE
8.6 years ago by Rob 7.2k
8
votes
1
reply
6.7k
views
Answer: C: Main difference between RSEM and k-mer based quantification methods
8.7 years ago by Rob 7.2k
2
votes
1
reply
4.3k
views
Comment: C: Differences between Counts and FPKMS
8.7 years ago by Rob 7.2k
0
votes
1
reply
4.3k
views
Comment: C: Differences between Counts and FPKMS
8.7 years ago by Rob 7.2k
1
vote
0
replies
4.3k
views
Comment: C: Differences between Counts and FPKMS
8.7 years ago by Rob 7.2k
5
votes
0
replies
4.3k
views
Answer: A: Differences between Counts and FPKMS
8.7 years ago by Rob 7.2k
2
votes
2
replies
2.6k
views
Answer: A: Shortest Missing K-mer
8.7 years ago by Rob 7.2k
0
votes
1
reply
2.1k
views
Comment: C: Any possible to run cuffdiff without cuffqunt?
8.7 years ago by Rob 7.2k
3
votes
1
reply
1.7k
views
Answer: A: Error in the generative model of RNA-Seq?
8.8 years ago by Rob 7.2k
0
votes
1
reply
7.3k
views
Comment: C: STAR-RSEM RNA-seq pipeline is deterministic?
9.0 years ago by Rob 7.2k
3
votes
1
reply
7.3k
views
Comment: C: STAR-RSEM RNA-seq pipeline is deterministic?
9.0 years ago by Rob 7.2k
0
votes
0
replies
8.8k
views
Comment: C: Salmon libtype - Does it matter?
9.2 years ago by Rob 7.2k
5
votes
0
replies
8.8k
views
Answer: A: Salmon libtype - Does it matter?
9.2 years ago by Rob 7.2k
2
votes
0
replies
7.0k
views
Comment: C: Does TPM account for fragments?
9.2 years ago by Rob 7.2k
2
votes
0
replies
4.3k
views
Answer: A: Can FM Index be built in linear time?
9.2 years ago by Rob 7.2k
1
vote
0
replies
7.0k
views
Comment: C: Does TPM account for fragments?
9.2 years ago by Rob 7.2k
1
vote
1
reply
7.0k
views
Comment: C: Does TPM account for fragments?
9.2 years ago by Rob 7.2k
1
vote
1
reply
7.0k
views
Comment: C: Does TPM account for fragments?
9.2 years ago by Rob 7.2k
5
votes
2
replies
7.0k
views
Answer: A: Does TPM account for fragments?
9.2 years ago by Rob 7.2k
0
votes
1
reply
11k
views
Comment: C: Salmon: Optimal k-mer size (for indexing) for RNA-seq data alignment using refer
9.3 years ago by Rob 7.2k
1
vote
1
reply
11k
views
Comment: C: Optimal k-mer size for RNA-seq data alignment using reference genome for indexin
9.3 years ago by Rob 7.2k
2
votes
2
replies
11k
views
Answer: A: Optimal k-mer size for RNA-seq data alignment using reference genome for indexin
9.3 years ago by Rob 7.2k
0
votes
1
reply
5.5k
views
Comment: C: Salmon warning detected suspicious pair
9.3 years ago by Rob 7.2k
0
votes
0
replies
23k
views
Comment: C: Current state-of-the-art for RNA-Seq gene / transcript expression quantification
9.4 years ago by Rob 7.2k
6
votes
0
replies
2.8k
views
Answer: A: Why samtools sort input file is 4.3 Gb but output become 3.5Gb....
9.4 years ago by Rob 7.2k
2
votes
1
reply
6.2k
views
Comment: C: RNA-Seq for DE analysis
9.6 years ago by Rob 7.2k
1
vote
1
reply
3.4k
views
Comment: C: Error in Transcript to gene level estimation using "Genesum" package
9.6 years ago by Rob 7.2k
1
vote
0
replies
23k
views
Comment: C: Current state-of-the-art for RNA-Seq gene / transcript expression quantification
9.6 years ago by Rob 7.2k
0
votes
0
replies
4.3k
views
Comment: C: RNA-seq mapper that allows variability and handles multi-mapping?
9.6 years ago by Rob 7.2k
1
vote
0
replies
4.3k
views
Comment: C: RNA-seq mapper that allows variability and handles multi-mapping?
9.6 years ago by Rob 7.2k
0
votes
0
replies
3.6k
views
Comment: C: Getting sequence id from k-mers using jellyfish
9.6 years ago by Rob 7.2k
3
votes
1
reply
3.6k
views
Answer: A: Getting sequence id from k-mers using jellyfish
9.6 years ago by Rob 7.2k
2
votes
2
replies
3.4k
views
Answer: A: Error in Transcript to gene level estimation using "Genesum" package
9.6 years ago by Rob 7.2k
0
votes
0
replies
5.6k
views
Comment: C: Merging more than 2 csv files in r studio?
9.6 years ago by Rob 7.2k
0
votes
0
replies
8.7k
views
Comment: C: HISAT2 end-to-end and --no-spliced-alignment mode returns gapped alignments
9.7 years ago by Rob 7.2k
8
votes
1
reply
3.1k
views
Comment: C: C++ tools are hard to install for biologist, why the community stick on it?
9.7 years ago by Rob 7.2k
2
votes
0
replies
8.7k
views
Comment: C: HISAT2 end-to-end and --no-spliced-alignment mode returns gapped alignments
9.7 years ago by Rob 7.2k
367 results • Page 6 of 8
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