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Comment: Comment: Help needed to troubleshoot a Bioconda recipe for a Rust tool
21 months ago by Rob 6.5k
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1.7k
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Comment: Comment: Help needed to troubleshoot a Bioconda recipe for a Rust tool
21 months ago by Rob 6.5k
1
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1
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1.7k
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Comment: Comment: Help needed to troubleshoot a Bioconda recipe for a Rust tool
21 months ago by Rob 6.5k
2
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0
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1.7k
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Comment: Comment: Help needed to troubleshoot a Bioconda recipe for a Rust tool
21 months ago by Rob 6.5k
2
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1
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1.7k
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Answer: Answer: Help needed to troubleshoot a Bioconda recipe for a Rust tool
21 months ago by Rob 6.5k
3
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1
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1.6k
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Answer: Answer: Effect of Bootstrapping/Gibbs Sampling in Salmon Counts
23 months ago by Rob 6.5k
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1
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872
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Answer: Answer: Is it correct to use Tophat2 directly followed by Cuffquant to only align to the
23 months ago by Rob 6.5k
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1.8k
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Comment: Comment: How does Salmon bootstrapping work?
24 months ago by Rob 6.5k
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1.8k
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Answer: Answer: How does Salmon bootstrapping work?
24 months ago by Rob 6.5k
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660
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Answer: Answer: Why is an effective length of a trasncript better than normal length?
2.2 years ago by Rob 6.5k
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1.1k
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Comment: Comment: Is there a minimum read count or number of genes for Salmon bias correction?
2.2 years ago by Rob 6.5k
3
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2.5k
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Answer: Answer: Fastest way to parse through a fasta file in python
2.2 years ago by Rob 6.5k
2
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0
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2.1k
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Comment: Comment: error when indexing transcroptome using salmon
2.3 years ago by Rob 6.5k
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1
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2.1k
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Comment: Comment: error when indexing transcroptome using salmon
2.3 years ago by Rob 6.5k
1
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1
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8.6k
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Comment: Comment: Jellyfish -C option explanation
2.3 years ago by Rob 6.5k
4
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2
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1.1k
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Answer: Answer: jellyfish count discrepancy between results obtained with and without -C optio
2.4 years ago by Rob 6.5k
1
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1
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1.8k
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Comment: Comment: Very low read counts for PD1 when using STAR aligner compared to BWA
2.5 years ago by Rob 6.5k
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1
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1.8k
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Answer: Answer: Very low read counts for PD1 when using STAR aligner compared to BWA
2.5 years ago by Rob 6.5k
4
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1
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6.0k
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Answer: Answer: UMAP vs "rigorous" t-SNE
2.7 years ago by Rob 6.5k
4
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1
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2.3k
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Answer: Answer: k-mer counters - presence/absence matrix
2.7 years ago by Rob 6.5k
2
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0
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6.7k
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Comment: Comment: Tools to generate spliced/unspliced counts
2.8 years ago by Rob 6.5k
0
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2
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2.1k
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Answer: Answer: STARsolo --EmptyDrops_CR parameters
2.8 years ago by Rob 6.5k
2
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1
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2.7k
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Answer: Answer: Star alingment, Salmon quantification
3.0 years ago by Rob 6.5k
3
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0
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1.2k
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Comment: Comment: Getting libType without running quantification with Salmon
3.0 years ago by Rob 6.5k
6
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1
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2.4k
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Answer: Answer: Inconsistency between alignment rates of BWA-mem and bowtie2
3.0 years ago by Rob 6.5k
0
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1
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1.8k
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Comment: C: Mapping rate troubles
3.2 years ago by Rob 6.5k
0
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1
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2.6k
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Comment: C: Salmon BAM target length different to FASTA file sequence length
3.2 years ago by Rob 6.5k
1
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1
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2.6k
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Comment: C: Salmon BAM target length different to FASTA file sequence length
3.2 years ago by Rob 6.5k
1
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2
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2.6k
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Comment: C: Salmon BAM target length different to FASTA file sequence length
3.3 years ago by Rob 6.5k
2
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1
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6.6k
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Comment: C: How to change cellranger multimapping algorithm
3.3 years ago by Rob 6.5k
1
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1
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6.6k
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Comment: C: How to change cellranger multimapping algorithm
3.3 years ago by Rob 6.5k
2
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0
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1.7k
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Comment: C: RNA-Seq junction reads overhang imbalance
3.4 years ago by Rob 6.5k
3
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0
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1.8k
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Answer: C: Quantify Isoforms in RNA-Seq data
3.4 years ago by Rob 6.5k
10
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1
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8.0k
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Answer: A: Rust or C++, what to learn after Go for high-performance bioinformatics tools?
3.5 years ago by Rob 6.5k
11
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0
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8.0k
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Answer: A: Rust or C++, what to learn after Go for high-performance bioinformatics tools?
3.5 years ago by Rob 6.5k
2
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0
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6.2k
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Comment: C: update salmon with conda
3.5 years ago by Rob 6.5k
2
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1
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6.2k
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Answer: A: update salmon with conda
3.5 years ago by Rob 6.5k
1
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0
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8.9k
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Comment: C: How does salmon deal with decoy?
3.6 years ago by Rob 6.5k
14
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2
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8.9k
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Comment: C: How does salmon deal with decoy?
3.6 years ago by Rob 6.5k
4
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1
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2.6k
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Answer: A: Gibbs sampling/bootstrap replicates in Salmon
3.6 years ago by Rob 6.5k
0
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1
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1.5k
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Comment: C: Transcripts with no read support
3.6 years ago by Rob 6.5k
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2
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1.5k
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Comment: C: Transcripts with no read support
3.6 years ago by Rob 6.5k
2
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1
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3.4k
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Answer: A: How can I align single RNA seq(scRNAseq) data by using STAR or another aligner?
3.6 years ago by Rob 6.5k
2
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1
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1.6k
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Answer: A: rsem-simulate-reads: simulating different data
3.7 years ago by Rob 6.5k
14
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1
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8.9k
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Answer: A: How does salmon deal with decoy?
3.7 years ago by Rob 6.5k
3
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1
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1.6k
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Answer: A: How to get different isoform's counts in different cell by using alevin (salmon
3.7 years ago by Rob 6.5k
0
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0
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1.5k
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Comment: C: Salmon or Kallisto without reference transcriptome - possible?
3.8 years ago by Rob 6.5k
2
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0
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964
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Answer: A: Trimmomatic and Salmon error
3.8 years ago by Rob 6.5k
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1
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1.9k
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Comment: C: Salmon building index and quantifying mapping questions
3.8 years ago by Rob 6.5k
0
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0
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1.9k
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Comment: C: Salmon building index and quantifying mapping questions
3.8 years ago by Rob 6.5k
343 results • Page 2 of 7
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