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2
votes
0
replies
1.8k
views
Comment:
Comment: error when indexing transcroptome using salmon
23 months ago by
Rob
6.3k
1
vote
1
reply
1.8k
views
Comment:
Comment: error when indexing transcroptome using salmon
23 months ago by
Rob
6.3k
1
vote
1
reply
7.9k
views
Comment:
Comment: Jellyfish -C option explanation
23 months ago by
Rob
6.3k
4
votes
2
replies
953
views
Answer:
Answer: jellyfish count discrepancy between results obtained with and without -C optio
23 months ago by
Rob
6.3k
1
vote
1
reply
1.5k
views
Comment:
Comment: Very low read counts for PD1 when using STAR aligner compared to BWA
2.1 years ago by
Rob
6.3k
1
vote
1
reply
1.5k
views
Answer:
Answer: Very low read counts for PD1 when using STAR aligner compared to BWA
2.1 years ago by
Rob
6.3k
4
votes
1
reply
5.7k
views
Answer:
Answer: UMAP vs "rigorous" t-SNE
2.3 years ago by
Rob
6.3k
4
votes
1
reply
2.0k
views
Answer:
Answer: k-mer counters - presence/absence matrix
2.3 years ago by
Rob
6.3k
2
votes
0
replies
5.8k
views
Comment:
Comment: Tools to generate spliced/unspliced counts
2.4 years ago by
Rob
6.3k
0
votes
2
replies
1.8k
views
Answer:
Answer: STARsolo --EmptyDrops_CR parameters
2.4 years ago by
Rob
6.3k
2
votes
1
reply
2.3k
views
Answer:
Answer: Star alingment, Salmon quantification
2.6 years ago by
Rob
6.3k
3
votes
0
replies
1.1k
views
Comment:
Comment: Getting libType without running quantification with Salmon
2.6 years ago by
Rob
6.3k
6
votes
1
reply
2.1k
views
Answer:
Answer: Inconsistency between alignment rates of BWA-mem and bowtie2
2.6 years ago by
Rob
6.3k
0
votes
1
reply
1.6k
views
Comment:
C: Mapping rate troubles
2.8 years ago by
Rob
6.3k
0
votes
1
reply
2.3k
views
Comment:
C: Salmon BAM target length different to FASTA file sequence length
2.8 years ago by
Rob
6.3k
1
vote
1
reply
2.3k
views
Comment:
C: Salmon BAM target length different to FASTA file sequence length
2.8 years ago by
Rob
6.3k
1
vote
2
replies
2.3k
views
Comment:
C: Salmon BAM target length different to FASTA file sequence length
2.8 years ago by
Rob
6.3k
2
votes
1
reply
6.1k
views
Comment:
C: How to change cellranger multimapping algorithm
2.9 years ago by
Rob
6.3k
1
vote
1
reply
6.1k
views
Comment:
C: How to change cellranger multimapping algorithm
2.9 years ago by
Rob
6.3k
2
votes
0
replies
1.5k
views
Comment:
C: RNA-Seq junction reads overhang imbalance
3.0 years ago by
Rob
6.3k
3
votes
0
replies
1.6k
views
Answer:
C: Quantify Isoforms in RNA-Seq data
3.0 years ago by
Rob
6.3k
10
votes
1
reply
7.4k
views
Answer:
A: Rust or C++, what to learn after Go for high-performance bioinformatics tools?
3.1 years ago by
Rob
6.3k
11
votes
0
replies
7.4k
views
Answer:
A: Rust or C++, what to learn after Go for high-performance bioinformatics tools?
3.1 years ago by
Rob
6.3k
2
votes
0
replies
5.3k
views
Comment:
C: update salmon with conda
3.1 years ago by
Rob
6.3k
2
votes
1
reply
5.3k
views
Answer:
A: update salmon with conda
3.1 years ago by
Rob
6.3k
1
vote
0
replies
7.9k
views
Comment:
C: How does salmon deal with decoy?
3.2 years ago by
Rob
6.3k
14
votes
2
replies
7.9k
views
Comment:
C: How does salmon deal with decoy?
3.2 years ago by
Rob
6.3k
4
votes
1
reply
2.5k
views
Answer:
A: Gibbs sampling/bootstrap replicates in Salmon
3.2 years ago by
Rob
6.3k
0
votes
1
reply
1.3k
views
Comment:
C: Transcripts with no read support
3.2 years ago by
Rob
6.3k
0
votes
2
replies
1.3k
views
Comment:
C: Transcripts with no read support
3.2 years ago by
Rob
6.3k
2
votes
1
reply
3.0k
views
Answer:
A: How can I align single RNA seq(scRNAseq) data by using STAR or another aligner?
3.2 years ago by
Rob
6.3k
2
votes
1
reply
1.4k
views
Answer:
A: rsem-simulate-reads: simulating different data
3.3 years ago by
Rob
6.3k
14
votes
1
reply
7.9k
views
Answer:
A: How does salmon deal with decoy?
3.3 years ago by
Rob
6.3k
3
votes
1
reply
1.4k
views
Answer:
A: How to get different isoform's counts in different cell by using alevin (salmon
3.3 years ago by
Rob
6.3k
0
votes
0
replies
1.3k
views
Comment:
C: Salmon or Kallisto without reference transcriptome - possible?
3.3 years ago by
Rob
6.3k
2
votes
0
replies
881
views
Answer:
A: Trimmomatic and Salmon error
3.4 years ago by
Rob
6.3k
1
vote
1
reply
1.7k
views
Comment:
C: Salmon building index and quantifying mapping questions
3.4 years ago by
Rob
6.3k
0
votes
0
replies
1.7k
views
Comment:
C: Salmon building index and quantifying mapping questions
3.4 years ago by
Rob
6.3k
1
vote
1
reply
2.8k
views
Comment:
C: minimap2: aligning multiple regions to a read in a fastq
3.4 years ago by
Rob
6.3k
3
votes
1
reply
1.9k
views
Answer:
A: Transcript level counts from full length scRNA data
3.4 years ago by
Rob
6.3k
0
votes
1
reply
3.8k
views
Comment:
C: DEseq2 results differs greatly when comparing output from STAR/featureCounts and
3.5 years ago by
Rob
6.3k
2
votes
1
reply
3.8k
views
Answer:
A: DEseq2 results differs greatly when comparing output from STAR/featureCounts and
3.5 years ago by
Rob
6.3k
3
votes
0
replies
3.3k
views
Answer:
A: Question related to time complexity of Needleman-Wunsch Algorithm
3.5 years ago by
Rob
6.3k
0
votes
0
replies
994
views
Comment:
C: Tool for computing all solutions to the small parsimony problem
3.5 years ago by
Rob
6.3k
2
votes
0
replies
1.8k
views
Comment:
C: having trouble running Salmon in anaconda prompt
3.6 years ago by
Rob
6.3k
0
votes
0
replies
1.8k
views
Comment:
C: having trouble running Salmon in anaconda prompt
3.6 years ago by
Rob
6.3k
1
vote
1
reply
2.1k
views
Comment:
C: hisat2 salmon alignment error
3.7 years ago by
Rob
6.3k
1
vote
1
reply
2.1k
views
Answer:
A: hisat2 salmon alignment error
3.7 years ago by
Rob
6.3k
0
votes
0
replies
906
views
Comment:
C: parameters mapping in salmon software
3.7 years ago by
Rob
6.3k
0
votes
0
replies
906
views
Comment:
C: parameters mapping in salmon software
3.7 years ago by
Rob
6.3k
331 results • Page
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