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3
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0
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876
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Comment: Comment: Getting libType without running quantification with Salmon
23 months ago by Rob 5.9k
4
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1
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1.5k
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Answer: Answer: Inconsistency between alignment rates of BWA-mem and bowtie2
23 months ago by Rob 5.9k
0
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1
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1.2k
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Comment: C: Mapping rate troubles
2.1 years ago by Rob 5.9k
0
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1
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1.7k
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Comment: C: Salmon BAM target length different to FASTA file sequence length
2.1 years ago by Rob 5.9k
1
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1
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1.7k
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Comment: C: Salmon BAM target length different to FASTA file sequence length
2.1 years ago by Rob 5.9k
1
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2
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1.7k
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Comment: C: Salmon BAM target length different to FASTA file sequence length
2.2 years ago by Rob 5.9k
2
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1
reply
5.1k
views
Comment: C: How to change cellranger multimapping algorithm
2.2 years ago by Rob 5.9k
1
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1
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5.1k
views
Comment: C: How to change cellranger multimapping algorithm
2.2 years ago by Rob 5.9k
2
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0
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1.0k
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Comment: C: RNA-Seq junction reads overhang imbalance
2.3 years ago by Rob 5.9k
3
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0
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1.0k
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Answer: C: Quantify Isoforms in RNA-Seq data
2.3 years ago by Rob 5.9k
10
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1
reply
6.1k
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Answer: A: Rust or C++, what to learn after Go for high-performance bioinformatics tools?
2.4 years ago by Rob 5.9k
11
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0
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6.1k
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Answer: A: Rust or C++, what to learn after Go for high-performance bioinformatics tools?
2.4 years ago by Rob 5.9k
2
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0
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3.7k
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Comment: C: update salmon with conda
2.4 years ago by Rob 5.9k
2
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1
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3.7k
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Answer: A: update salmon with conda
2.4 years ago by Rob 5.9k
1
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0
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6.0k
views
Comment: C: How does salmon deal with decoy?
2.5 years ago by Rob 5.9k
11
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2
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6.0k
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Comment: C: How does salmon deal with decoy?
2.5 years ago by Rob 5.9k
4
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1
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2.0k
views
Answer: A: Gibbs sampling/bootstrap replicates in Salmon
2.5 years ago by Rob 5.9k
0
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1
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1.0k
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Comment: C: Transcripts with no read support
2.5 years ago by Rob 5.9k
0
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2
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1.0k
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Comment: C: Transcripts with no read support
2.5 years ago by Rob 5.9k
2
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1
reply
2.2k
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Answer: A: How can I align single RNA seq(scRNAseq) data by using STAR or another aligner?
2.5 years ago by Rob 5.9k
2
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1
reply
1.2k
views
Answer: A: rsem-simulate-reads: simulating different data
2.6 years ago by Rob 5.9k
11
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1
reply
6.0k
views
Answer: A: How does salmon deal with decoy?
2.6 years ago by Rob 5.9k
3
votes
1
reply
1.1k
views
Answer: A: How to get different isoform's counts in different cell by using alevin (salmon
2.6 years ago by Rob 5.9k
0
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0
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1.1k
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Comment: C: Salmon or Kallisto without reference transcriptome - possible?
2.7 years ago by Rob 5.9k
2
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0
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724
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Answer: A: Trimmomatic and Salmon error
2.7 years ago by Rob 5.9k
1
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1
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1.2k
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Comment: C: Salmon building index and quantifying mapping questions
2.7 years ago by Rob 5.9k
0
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0
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1.2k
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Comment: C: Salmon building index and quantifying mapping questions
2.7 years ago by Rob 5.9k
1
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1
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2.2k
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Comment: C: minimap2: aligning multiple regions to a read in a fastq
2.7 years ago by Rob 5.9k
3
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1
reply
1.4k
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Answer: A: Transcript level counts from full length scRNA data
2.8 years ago by Rob 5.9k
0
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1
reply
3.0k
views
Comment: C: DEseq2 results differs greatly when comparing output from STAR/featureCounts and
2.8 years ago by Rob 5.9k
1
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1
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3.0k
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Answer: A: DEseq2 results differs greatly when comparing output from STAR/featureCounts and
2.8 years ago by Rob 5.9k
3
votes
0
replies
2.7k
views
Answer: A: Question related to time complexity of Needleman-Wunsch Algorithm
2.8 years ago by Rob 5.9k
0
votes
0
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873
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Comment: C: Tool for computing all solutions to the small parsimony problem
2.8 years ago by Rob 5.9k
2
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0
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1.5k
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Comment: C: having trouble running Salmon in anaconda prompt
2.9 years ago by Rob 5.9k
0
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0
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1.5k
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Comment: C: having trouble running Salmon in anaconda prompt
2.9 years ago by Rob 5.9k
1
vote
1
reply
1.7k
views
Comment: C: hisat2 salmon alignment error
3.0 years ago by Rob 5.9k
1
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1
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1.7k
views
Answer: A: hisat2 salmon alignment error
3.0 years ago by Rob 5.9k
0
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0
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786
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Comment: C: parameters mapping in salmon software
3.0 years ago by Rob 5.9k
0
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0
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786
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Comment: C: parameters mapping in salmon software
3.0 years ago by Rob 5.9k
1
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2
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1.2k
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Comment: C: can salmon distinguish similar transcript?
3.0 years ago by Rob 5.9k
5
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3
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1.2k
views
Answer: C: can salmon distinguish similar transcript?
3.0 years ago by Rob 5.9k
3
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1
reply
2.7k
views
Answer: A: warning when creating salmon index from GENCODE transcriptome
3.1 years ago by Rob 5.9k
2
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1
reply
941
views
Answer: C: Salmon only processes human reads from PDX data
3.1 years ago by Rob 5.9k
2
votes
2
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4.0k
views
Comment: C: Sailfish TPM normalization: does it take into account the size the library?
updated 3.2 years ago by 38k • written 7.1 years ago by 5.9k
1
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1
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2.5k
views
Comment: C: Can k-tuple(k-mer/k-word) methods apply to reads generated from next-generation
updated 3.2 years ago by 38k • written 8.8 years ago by 5.9k
2
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0
replies
4.7k
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Comment: C: confusion in the DeBruijn Graph
updated 3.2 years ago by 38k • written 7.1 years ago by 5.9k
1
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1
reply
4.7k
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Comment: C: confusion in the DeBruijn Graph
updated 3.2 years ago by 38k • written 7.1 years ago by 5.9k
6
votes
2
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41k
views
Answer: A: Up-to-date Online RNA Sequence Analysis Training/Courses/Papers?
updated 3.2 years ago by 38k • written 7.1 years ago by 5.9k
3
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0
replies
6.1k
views
Answer: A: K-mers using JEllyfish
updated 3.2 years ago by 38k • written 8.8 years ago by 5.9k
2
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0
replies
4.9k
views
Comment: C: align shortreads using R
updated 3.2 years ago by 38k • written 7.1 years ago by 5.9k
320 results • Page 2 of 7
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