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1.8k
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Comment: Comment: error when indexing transcroptome using salmon
23 months ago by Rob 6.3k
1
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1
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1.8k
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Comment: Comment: error when indexing transcroptome using salmon
23 months ago by Rob 6.3k
1
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1
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7.9k
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Comment: Comment: Jellyfish -C option explanation
23 months ago by Rob 6.3k
4
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2
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953
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Answer: Answer: jellyfish count discrepancy between results obtained with and without -C optio
23 months ago by Rob 6.3k
1
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1
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1.5k
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Comment: Comment: Very low read counts for PD1 when using STAR aligner compared to BWA
2.1 years ago by Rob 6.3k
1
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1
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1.5k
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Answer: Answer: Very low read counts for PD1 when using STAR aligner compared to BWA
2.1 years ago by Rob 6.3k
4
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1
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5.7k
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Answer: Answer: UMAP vs "rigorous" t-SNE
2.3 years ago by Rob 6.3k
4
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1
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2.0k
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Answer: Answer: k-mer counters - presence/absence matrix
2.3 years ago by Rob 6.3k
2
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0
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5.8k
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Comment: Comment: Tools to generate spliced/unspliced counts
2.4 years ago by Rob 6.3k
0
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2
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1.8k
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Answer: Answer: STARsolo --EmptyDrops_CR parameters
2.4 years ago by Rob 6.3k
2
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1
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2.3k
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Answer: Answer: Star alingment, Salmon quantification
2.6 years ago by Rob 6.3k
3
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0
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1.1k
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Comment: Comment: Getting libType without running quantification with Salmon
2.6 years ago by Rob 6.3k
6
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1
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2.1k
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Answer: Answer: Inconsistency between alignment rates of BWA-mem and bowtie2
2.6 years ago by Rob 6.3k
0
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1
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1.6k
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Comment: C: Mapping rate troubles
2.8 years ago by Rob 6.3k
0
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1
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2.3k
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Comment: C: Salmon BAM target length different to FASTA file sequence length
2.8 years ago by Rob 6.3k
1
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1
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2.3k
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Comment: C: Salmon BAM target length different to FASTA file sequence length
2.8 years ago by Rob 6.3k
1
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2
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2.3k
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Comment: C: Salmon BAM target length different to FASTA file sequence length
2.8 years ago by Rob 6.3k
2
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1
reply
6.1k
views
Comment: C: How to change cellranger multimapping algorithm
2.9 years ago by Rob 6.3k
1
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1
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6.1k
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Comment: C: How to change cellranger multimapping algorithm
2.9 years ago by Rob 6.3k
2
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0
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1.5k
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Comment: C: RNA-Seq junction reads overhang imbalance
3.0 years ago by Rob 6.3k
3
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0
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1.6k
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Answer: C: Quantify Isoforms in RNA-Seq data
3.0 years ago by Rob 6.3k
10
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1
reply
7.4k
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Answer: A: Rust or C++, what to learn after Go for high-performance bioinformatics tools?
3.1 years ago by Rob 6.3k
11
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0
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7.4k
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Answer: A: Rust or C++, what to learn after Go for high-performance bioinformatics tools?
3.1 years ago by Rob 6.3k
2
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0
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5.3k
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Comment: C: update salmon with conda
3.1 years ago by Rob 6.3k
2
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1
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5.3k
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Answer: A: update salmon with conda
3.1 years ago by Rob 6.3k
1
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0
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7.9k
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Comment: C: How does salmon deal with decoy?
3.2 years ago by Rob 6.3k
14
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2
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7.9k
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Comment: C: How does salmon deal with decoy?
3.2 years ago by Rob 6.3k
4
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1
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2.5k
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Answer: A: Gibbs sampling/bootstrap replicates in Salmon
3.2 years ago by Rob 6.3k
0
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1
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1.3k
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Comment: C: Transcripts with no read support
3.2 years ago by Rob 6.3k
0
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2
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1.3k
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Comment: C: Transcripts with no read support
3.2 years ago by Rob 6.3k
2
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1
reply
3.0k
views
Answer: A: How can I align single RNA seq(scRNAseq) data by using STAR or another aligner?
3.2 years ago by Rob 6.3k
2
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1
reply
1.4k
views
Answer: A: rsem-simulate-reads: simulating different data
3.3 years ago by Rob 6.3k
14
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1
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7.9k
views
Answer: A: How does salmon deal with decoy?
3.3 years ago by Rob 6.3k
3
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1
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1.4k
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Answer: A: How to get different isoform's counts in different cell by using alevin (salmon
3.3 years ago by Rob 6.3k
0
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0
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1.3k
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Comment: C: Salmon or Kallisto without reference transcriptome - possible?
3.3 years ago by Rob 6.3k
2
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0
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881
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Answer: A: Trimmomatic and Salmon error
3.4 years ago by Rob 6.3k
1
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1
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1.7k
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Comment: C: Salmon building index and quantifying mapping questions
3.4 years ago by Rob 6.3k
0
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0
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1.7k
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Comment: C: Salmon building index and quantifying mapping questions
3.4 years ago by Rob 6.3k
1
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1
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2.8k
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Comment: C: minimap2: aligning multiple regions to a read in a fastq
3.4 years ago by Rob 6.3k
3
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1
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1.9k
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Answer: A: Transcript level counts from full length scRNA data
3.4 years ago by Rob 6.3k
0
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1
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3.8k
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Comment: C: DEseq2 results differs greatly when comparing output from STAR/featureCounts and
3.5 years ago by Rob 6.3k
2
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1
reply
3.8k
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Answer: A: DEseq2 results differs greatly when comparing output from STAR/featureCounts and
3.5 years ago by Rob 6.3k
3
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0
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3.3k
views
Answer: A: Question related to time complexity of Needleman-Wunsch Algorithm
3.5 years ago by Rob 6.3k
0
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0
replies
994
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Comment: C: Tool for computing all solutions to the small parsimony problem
3.5 years ago by Rob 6.3k
2
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0
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1.8k
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Comment: C: having trouble running Salmon in anaconda prompt
3.6 years ago by Rob 6.3k
0
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0
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1.8k
views
Comment: C: having trouble running Salmon in anaconda prompt
3.6 years ago by Rob 6.3k
1
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1
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2.1k
views
Comment: C: hisat2 salmon alignment error
3.7 years ago by Rob 6.3k
1
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1
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2.1k
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Answer: A: hisat2 salmon alignment error
3.7 years ago by Rob 6.3k
0
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0
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906
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Comment: C: parameters mapping in salmon software
3.7 years ago by Rob 6.3k
0
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0
replies
906
views
Comment: C: parameters mapping in salmon software
3.7 years ago by Rob 6.3k
331 results • Page 2 of 7
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