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1
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0
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1.2k
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Comment:
Comment: High discrepancy between Primary estimate and Bootstraps from Salmon
2.2 years ago by
Rob
6.9k
3
votes
1
reply
1.2k
views
Answer:
Answer: High discrepancy between Primary estimate and Bootstraps from Salmon
2.2 years ago by
Rob
6.9k
3
votes
0
replies
703
views
Answer:
Answer: Stranded or unstranded? That is the question
2.2 years ago by
Rob
6.9k
2
votes
1
reply
1.1k
views
Answer:
Answer: Salmon libtype guessing and mapping bias
2.2 years ago by
Rob
6.9k
2
votes
0
replies
3.3k
views
Answer:
Answer: Can bioinformatics Phds be completely or almost completely done remotely?
2.3 years ago by
Rob
6.9k
1
vote
1
reply
829
views
Answer:
Answer: Splice aware or not for RNA sequence data
2.3 years ago by
Rob
6.9k
1
vote
0
replies
3.7k
views
Comment:
Comment: CellRanger runs into error when running fastq files from SRA
2.3 years ago by
Rob
6.9k
0
votes
1
reply
3.7k
views
Comment:
Comment: CellRanger runs into error when running fastq files from SRA
2.3 years ago by
Rob
6.9k
2
votes
0
replies
1.5k
views
Comment:
Comment: Does RSEM ignore STAR's splice-aware nature?
2.4 years ago by
Rob
6.9k
1
vote
1
reply
2.2k
views
Comment:
Comment: found no concordant and consistent mapping using Salmon
2.4 years ago by
Rob
6.9k
0
votes
1
reply
2.2k
views
Comment:
Comment: found no concordant and consistent mapping using Salmon
2.4 years ago by
Rob
6.9k
2
votes
0
replies
1.3k
views
Answer:
Answer: strand specificity
2.4 years ago by
Rob
6.9k
1
vote
1
reply
3.9k
views
Comment:
Comment: How to get TPM values from the STAR output?
2.4 years ago by
Rob
6.9k
1
vote
1
reply
3.9k
views
Comment:
Comment: How to get TPM values from the STAR output?
2.4 years ago by
Rob
6.9k
0
votes
1
reply
2.0k
views
Comment:
Comment: Help needed to troubleshoot a Bioconda recipe for a Rust tool
2.4 years ago by
Rob
6.9k
1
vote
1
reply
2.0k
views
Comment:
Comment: Help needed to troubleshoot a Bioconda recipe for a Rust tool
2.4 years ago by
Rob
6.9k
1
vote
1
reply
2.0k
views
Comment:
Comment: Help needed to troubleshoot a Bioconda recipe for a Rust tool
2.4 years ago by
Rob
6.9k
2
votes
0
replies
2.0k
views
Comment:
Comment: Help needed to troubleshoot a Bioconda recipe for a Rust tool
2.4 years ago by
Rob
6.9k
2
votes
1
reply
2.0k
views
Answer:
Answer: Help needed to troubleshoot a Bioconda recipe for a Rust tool
2.4 years ago by
Rob
6.9k
3
votes
1
reply
2.0k
views
Answer:
Answer: Effect of Bootstrapping/Gibbs Sampling in Salmon Counts
2.5 years ago by
Rob
6.9k
0
votes
1
reply
1.0k
views
Answer:
Answer: Is it correct to use Tophat2 directly followed by Cuffquant to only align to the
2.6 years ago by
Rob
6.9k
1
vote
1
reply
2.2k
views
Comment:
Comment: How does Salmon bootstrapping work?
2.6 years ago by
Rob
6.9k
4
votes
1
reply
2.2k
views
Answer:
Answer: How does Salmon bootstrapping work?
2.6 years ago by
Rob
6.9k
0
votes
0
replies
792
views
Answer:
Answer: Why is an effective length of a trasncript better than normal length?
2.8 years ago by
Rob
6.9k
0
votes
0
replies
1.4k
views
Comment:
Comment: Is there a minimum read count or number of genes for Salmon bias correction?
2.8 years ago by
Rob
6.9k
3
votes
0
replies
3.4k
views
Answer:
Answer: Fastest way to parse through a fasta file in python
2.9 years ago by
Rob
6.9k
2
votes
0
replies
2.5k
views
Comment:
Comment: error when indexing transcroptome using salmon
3.0 years ago by
Rob
6.9k
1
vote
1
reply
2.5k
views
Comment:
Comment: error when indexing transcroptome using salmon
3.0 years ago by
Rob
6.9k
1
vote
1
reply
9.4k
views
Comment:
Comment: Jellyfish -C option explanation
3.0 years ago by
Rob
6.9k
4
votes
2
replies
1.3k
views
Answer:
Answer: jellyfish count discrepancy between results obtained with and without -C optio
3.0 years ago by
Rob
6.9k
1
vote
1
reply
2.1k
views
Comment:
Comment: Very low read counts for PD1 when using STAR aligner compared to BWA
3.1 years ago by
Rob
6.9k
1
vote
1
reply
2.1k
views
Answer:
Answer: Very low read counts for PD1 when using STAR aligner compared to BWA
3.1 years ago by
Rob
6.9k
4
votes
1
reply
6.5k
views
Answer:
Answer: UMAP vs "rigorous" t-SNE
3.3 years ago by
Rob
6.9k
4
votes
1
reply
2.8k
views
Answer:
Answer: k-mer counters - presence/absence matrix
3.4 years ago by
Rob
6.9k
2
votes
0
replies
7.8k
views
Comment:
Comment: Tools to generate spliced/unspliced counts
3.4 years ago by
Rob
6.9k
0
votes
2
replies
2.5k
views
Answer:
Answer: STARsolo --EmptyDrops_CR parameters
3.5 years ago by
Rob
6.9k
2
votes
1
reply
3.3k
views
Answer:
Answer: Star alingment, Salmon quantification
3.6 years ago by
Rob
6.9k
3
votes
0
replies
1.4k
views
Comment:
Comment: Getting libType without running quantification with Salmon
3.6 years ago by
Rob
6.9k
6
votes
1
reply
2.8k
views
Answer:
Answer: Inconsistency between alignment rates of BWA-mem and bowtie2
3.6 years ago by
Rob
6.9k
0
votes
1
reply
2.1k
views
Comment:
C: Mapping rate troubles
3.8 years ago by
Rob
6.9k
0
votes
1
reply
3.2k
views
Comment:
C: Salmon BAM target length different to FASTA file sequence length
3.9 years ago by
Rob
6.9k
1
vote
1
reply
3.2k
views
Comment:
C: Salmon BAM target length different to FASTA file sequence length
3.9 years ago by
Rob
6.9k
1
vote
2
replies
3.2k
views
Comment:
C: Salmon BAM target length different to FASTA file sequence length
3.9 years ago by
Rob
6.9k
2
votes
1
reply
7.4k
views
Comment:
C: How to change cellranger multimapping algorithm
3.9 years ago by
Rob
6.9k
1
vote
1
reply
7.4k
views
Comment:
C: How to change cellranger multimapping algorithm
3.9 years ago by
Rob
6.9k
2
votes
0
replies
2.2k
views
Comment:
C: RNA-Seq junction reads overhang imbalance
4.0 years ago by
Rob
6.9k
3
votes
0
replies
2.2k
views
Answer:
C: Quantify Isoforms in RNA-Seq data
4.0 years ago by
Rob
6.9k
10
votes
1
reply
9.2k
views
Answer:
A: Rust or C++, what to learn after Go for high-performance bioinformatics tools?
4.2 years ago by
Rob
6.9k
11
votes
0
replies
9.2k
views
Answer:
A: Rust or C++, what to learn after Go for high-performance bioinformatics tools?
4.2 years ago by
Rob
6.9k
2
votes
0
replies
7.2k
views
Comment:
C: update salmon with conda
4.2 years ago by
Rob
6.9k
357 results • Page
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