User: sviatoslav.kendall
sviatoslav.kendall • 770
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Posts by sviatoslav.kendall
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... I just got the error message you've posted when trying to run a similarly developed docker image using a command like:
docker run
Whereas I typically run these sorts of docker images interactively with a command like:
docker run -it bash
...and then run an Rscript inside the docker imag ...
written 10 weeks ago by
sviatoslav.kendall • 770
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... Sorry, I haven't got much experience calling R scripts from inside Python and I don't know what to make of that error message either. ...
written 11 weeks ago by
sviatoslav.kendall • 770
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... Try using one of [Bioconductor's own Docker containers][1] as a starting point and then modify the install.R script to include DESeq2 and any required dependencies. Here's an example of a modified Dockerfile and install.R script I made recently that seems to work OK.
Dockerfile
FROM bioconduct ...
written 11 weeks ago by
sviatoslav.kendall • 770
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... > I'll acknowledge that some of my direct responses to the original
> poster could have been more diplomatic,
And I will acknowledge that I also could have been more diplomatic with you. Sorry about that. Despite our disagreements, I'm much more interested fostering a productive discussion th ...
written 3 months ago by
sviatoslav.kendall • 770
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... This is really interesting. I agree with a lot of the suspicion and cynicism you've expressed even though I draw some different conclusions than you do. Certainly governments, non-profits and businesses alike have been known to exaggerate and even manufacture crises for the purpose of manipulating t ...
written 3 months ago by
sviatoslav.kendall • 770
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... > the scariest widely acknowledged manmade atmospheric near-disaster to
> date
What are you referring to? I re-read every comment you've made on this page and I don't see any that answers this question. My best guess is that you're talking about ozone depletion but I'd rather be clear about w ...
written 3 months ago by
sviatoslav.kendall • 770
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... Thanks for sharing that interesting link about a volcanic repution. Are you sure that eruption "dwarfs" the scale of human activity though? The Wikipedia page you linked cites emissions as high as 120 teragrams which I understand to be equal to 120,000,000 metric tons (or "tonnes" as they're sometim ...
written 3 months ago by
sviatoslav.kendall • 770
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... It's good to be skeptical of claims made in "top-tier" publications like Nature but I think it only makes sense to base such skepticism on the *substance* of what they published rather than their "top-tier" status. Are there any claims made in that article about "tipping point events" that you think ...
written 3 months ago by
sviatoslav.kendall • 770
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... Here's an [article published in Nature][1] that disagrees with your assertions about urgency. Seems to me the root of the disagreement comes down to how concerned you are about **"tipping point" events**. Personally, I'm very concerned because I suspect that many of the projections we've seen have b ...
written 3 months ago by
sviatoslav.kendall • 770
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... Interesting take. Would you mind unpacking that a bit for us in an "Answer"? Maybe provide an example of inefficient code alongside an explanation of how much energy is wasted running it on an input file of size X. Could be a pretty strong motivator for someone to realize, "Oh wow, that job I ran ov ...
written 3 months ago by
sviatoslav.kendall • 770
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