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Convert CRAM to BAM in pysam
python pysam BAM CRAM
updated 17 days ago by 20k • written 18 days ago by ▴ 920
0
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0
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311
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Answer: Answer: Convert CRAM to BAM in pysam
17 days ago by sviatoslav.kendall ▴ 920
3
votes
1
reply
1.4k
views
Comment: Comment: Interpreting phylogenetics tree
17 days ago by sviatoslav.kendall ▴ 920
1
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1
reply
1.4k
views
Answer: Answer: Interpreting phylogenetics tree
23 days ago by sviatoslav.kendall ▴ 920
0
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0
replies
132
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Good Primers on Ancestry Methods for Humans
ancestry snv human-genome
updated 4 weeks ago by 44k • written 4 weeks ago by ▴ 920
0
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0
replies
427
views
Database of Embryo-Lethal or Known Knockout Phenotype Genes in Rice
annotation database rice gene
20 months ago by sviatoslav.kendall ▴ 920
1
vote
2
replies
1.8k
views
Strange issue retrieving sequences from a local BLAST database made using a Uniprot proteome
blast protein sequence fasta uniprot
updated 2.8 years ago by 146k • written 2.8 years ago by ▴ 920
0
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0
replies
804
views
Bulk downloads from CNGB
CNGB
updated 18 months ago by 44k • written 4.3 years ago by ▴ 920
0
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1
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4.9k
views
Comment: C: How can I run a Biopython qblast search targeting a specific set of organisms?
4.4 years ago by sviatoslav.kendall ▴ 920
6
votes
4
replies
4.9k
views
How can I run a Biopython qblast search targeting a specific set of organisms?
BLAST Biopython
updated 4.4 years ago by ▴ 650 • written 4.4 years ago by ▴ 920
0
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0
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4.6k
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Comment: C: How to calculate TMB for somatic data TCGA
4.5 years ago by sviatoslav.kendall ▴ 920
0
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0
replies
4.1k
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Comment: C: Can't install DESeq2 via Docker container because of dependency issues
4.7 years ago by sviatoslav.kendall ▴ 920
0
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0
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4.1k
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Comment: C: Can't install DESeq2 via Docker container because of dependency issues
4.7 years ago by sviatoslav.kendall ▴ 920
2
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2
replies
4.1k
views
Answer: A: Can't install DESeq2 via Docker container because of dependency issues
4.7 years ago by sviatoslav.kendall ▴ 920
0
votes
1
reply
2.9k
views
Comment: C: Trouble renaming output files after running PHYLIP programs from a BASH script
updated 4.8 years ago by 44k • written 8.8 years ago by ▴ 920
1
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0
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7.0k
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Comment: C: Bioinformatics vs. the Climate Crisis
4.8 years ago by sviatoslav.kendall ▴ 920
2
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0
replies
7.0k
views
Comment: C: Bioinformatics vs. the Climate Crisis
4.8 years ago by sviatoslav.kendall ▴ 920
1
vote
0
replies
7.0k
views
Comment: C: Bioinformatics vs. the Climate Crisis
4.8 years ago by sviatoslav.kendall ▴ 920
3
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1
reply
7.0k
views
Comment: C: Bioinformatics vs. the Climate Crisis
4.8 years ago by sviatoslav.kendall ▴ 920
2
votes
1
reply
7.0k
views
Comment: C: Bioinformatics vs. the Climate Crisis
4.8 years ago by sviatoslav.kendall ▴ 920
2
votes
1
reply
7.0k
views
Comment: C: Bioinformatics vs. the Climate Crisis
4.8 years ago by sviatoslav.kendall ▴ 920
0
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1
reply
7.0k
views
Comment: C: Bioinformatics vs. the Climate Crisis
4.8 years ago by sviatoslav.kendall ▴ 920
134
votes
65
replies
7.0k
views
11 follow
Forum: Bioinformatics vs. the Climate Crisis
RNA-Seq Climate
updated 16 months ago by 44k • written 4.8 years ago by ▴ 920
2
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2
replies
7.0k
views
Comment: C: Bioinformatics vs. the Climate Crisis
4.8 years ago by sviatoslav.kendall ▴ 920
2
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1
reply
1.9k
views
Answer: A: Bioinformaticians - Am I on the Right Track?
4.8 years ago by sviatoslav.kendall ▴ 920
0
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0
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2.4k
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Comment: C: Strelka2 and single tumour sample
5.0 years ago by sviatoslav.kendall ▴ 920
10
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12
replies
4.4k
views
8 follow
Which Driver-Gene Detecting Software Supports hg38?
2020+ MutSig2CV MuSiC
updated 2.9 years ago by ▴ 340 • written 5.3 years ago by ▴ 920
0
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1
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4.4k
views
Comment: C: Which Driver-Gene Detecting Software Supports hg38?
5.3 years ago by sviatoslav.kendall ▴ 920
1
vote
1
reply
1.3k
views
Can splice-site mutations be treated as gene knock-outs?
SNP sequencing
updated 6.6 years ago by 47k • written 6.6 years ago by ▴ 920
1
vote
1
reply
3.2k
views
In FACETS, what does the mafR value represent?
CNV
updated 7.2 years ago by ▴ 970 • written 8.2 years ago by ▴ 920
0
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0
replies
2.7k
views
Question about Copy-Number Data produced using Sequenza
R copy-number Sequenza
updated 7.3 years ago by 20 • written 7.5 years ago by ▴ 920
0
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0
replies
2.7k
views
Filter out Non-Diploid segments in FACETS data
sequencing R FACETS CNV
7.4 years ago by sviatoslav.kendall ▴ 920
1
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0
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2.6k
views
Answer: A: DNA differential methylation analysis for Illumina Human Methylation 450k and 27
7.5 years ago by sviatoslav.kendall ▴ 920
3
votes
1
reply
10k
views
Answer: A: survival analysis with a continuos variable
7.7 years ago by sviatoslav.kendall ▴ 920
3
votes
0
replies
27k
views
Comment: C: Colors in IGV
7.9 years ago by sviatoslav.kendall ▴ 920
0
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0
replies
1.8k
views
SNPEFF Sequence Ontology Terms that are equivalent to a Loss of Function
snp sequencing
updated 7.9 years ago by 20 • written 8.1 years ago by ▴ 920
1
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0
replies
3.4k
views
Comment: C: Majors for a career in Bioinformatics
8.1 years ago by sviatoslav.kendall ▴ 920
0
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0
replies
2.4k
views
Comment: C: Diff exp analysis of 450k methylation data, what is appropriate, logistic or li
8.2 years ago by sviatoslav.kendall ▴ 920
1
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1
reply
2.4k
views
Answer: A: Diff exp analysis of 450k methylation data, what is appropriate, logistic or li
8.2 years ago by sviatoslav.kendall ▴ 920
0
votes
0
replies
2.4k
views
DNA Methylation: how do Percent Methylation values compare to PMR?
R sequencing Methylation
8.2 years ago by sviatoslav.kendall ▴ 920
36
votes
8
replies
3.9k
views
6 follow
Forum: Time Management Strategies and Advice for Bioinformaticians
professional-skills
updated 18 months ago by 44k • written 8.3 years ago by ▴ 920
0
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0
replies
21k
views
Comment: C: Scatter Plot For Correlations With Heatdensity
8.4 years ago by sviatoslav.kendall ▴ 920
0
votes
0
replies
893
views
Tool for getting every CHROM_POS_REF_ALT that will produce specific point mutation
genome gene
8.5 years ago by sviatoslav.kendall ▴ 920
13
votes
13
replies
6.5k
views
How Successful are new Bioinformatics Software Companies?
business software SAAS
updated 8.5 years ago by ★ 2.1k • written 8.5 years ago by ▴ 920
0
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2
replies
5.5k
views
Answer: A: How to calculate hydrogen bonds of a protein structure from its pdb file?
8.6 years ago by sviatoslav.kendall ▴ 920
2
votes
2
replies
3.6k
views
Tools to display mutations in a protein's structure
protein sequence
updated 8.6 years ago by ★ 3.2k • written 8.6 years ago by ▴ 920
1
vote
0
replies
3.6k
views
Comment: C: Tools to display mutations in a protein's structure
8.6 years ago by sviatoslav.kendall ▴ 920
8
votes
6
replies
3.4k
views
How can a gene exist on three different chromosomes!?!?
gene genome
updated 2.2 years ago by 44k • written 8.7 years ago by ▴ 920
4
votes
2
replies
2.1k
views
Phylogenic Analyses using non-sequential sequences
sequence
updated 2.2 years ago by 44k • written 8.7 years ago by ▴ 920
6
votes
4
replies
2.9k
views
Trouble renaming output files after running PHYLIP programs from a BASH script
PHYLIP sequence software-error
updated 2.2 years ago by 44k • written 8.8 years ago by ▴ 920
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