Latest
Open
RNA-Seq
ChIP-Seq
SNP
Assembly
Tutorials
Tools
Jobs
Forum
Planet
All »
Home
Log In

User: thind.amarinder

gravatar for thind.amarinder
Reputation:
10
Status:
New User
Location:
Italy
Last seen:
16 minutes ago
Joined:
4 years, 1 month ago
Email:
t**************@gmail.com

Posts by thind.amarinder

<prev • 8 results • page 1 of 1 • next >
0
votes
0
answers
117
views
0
answers
Comment: C: How to compare coexpression networks from two conditions with different sample s
... Thank you, it seems the way "psych" calculated p.adjust is similar. ...
written 7 days ago by thind.amarinder • 10
0
votes
0
answers
117
views
0
answers
Comment: C: How to compare coexpression networks from two conditions with different sample s
... How do you calculate significance ( p-adjusted values) for correlation? ...
written 7 days ago by thind.amarinder • 10
0
votes
0
answers
117
views
0
answers
Comment: C: How to compare coexpression networks from two conditions with different sample s
... Yes, how can I go about this? ...
written 8 days ago by thind.amarinder • 10
0
votes
0
answers
117
views
0
answers
Comment: C: How to compare coexpression networks from two conditions with different sample s
... Ciao I am not exactly comparing networks. but want to compare interactions of particular set of genes (of my interest) with others (if any), above certain threshold of correlation . whether interacting genes are mostly the same or different in both condition. since sample size is different between c ...
written 8 days ago by thind.amarinder • 10
2
votes
0
answers
117
views
0
answers
How to compare coexpression networks from two conditions with different sample sizes
... I have gene expression data from two conditions having different sample sizes i.e 8 and 32. I want to build a correlation among all genes (for both conditions) for comparison. So, I used "psych" package from "R" which use t-test based statistics for p-adjusted values calculations. Is this approach ...
correlation rna-seq gene networks coexpression written 13 days ago by thind.amarinder • 10
0
votes
2
answers
1.5k
views
2
answers
Comment: C: Is there a way to adjust correlation based on sample size
... @Michael Dondrup what if I have two correlational networks (from two experimental conditions) one of size 8 samples and one is of size 32 samples. How I can make these two compare with each other or how to readjust correlation or calculate p-adjust with respect to the different number of samples. I ...
written 14 days ago by thind.amarinder • 10
1
vote
1
answer
1.4k
views
1
answers
Answer: A: the criteria that need to be used as template sequence for homology modeling
... For homology modeling Identity, coverage and E-value all are significant. First choose the template with highest coverage and then look for identity if identity is more than 40 % , Then proceed further (But  remember, structure ll be predicted  only for coverage sequence).    Why to choose highest ...
written 3.3 years ago by thind.amarinder • 10
0
votes
0
answers
1.2k
views
0
answers
Not able to retrieve PDB id from standalone blast against PDB
... I setup blast against nr database/pdb (downloaded  from ncbi) and I want to extract PDB id from my blast results. I used various tags from blast output format but in some entries I am not Getting PDB id. sample of results: gi|349951|pdb|3YPI|A gi|349951|pdb|3YPI|A;gi|349952|pdb|3YPI|B ...
blast written 4.1 years ago by thind.amarinder • 10 • updated 4.0 years ago by Biostar ♦♦ 20

Latest awards to thind.amarinder

Popular Question 3.1 years ago, created a question with more than 1,000 views. For Not able to retrieve PDB id from standalone blast against PDB
Content
Help
Access
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 2248 users visited in the last hour