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0
votes
0
replies
128
views
How to use conumee segment mean for gistic input
genomics
gistic
NGS
methylation
conumee
4 months ago by
Thind amarinder
▴ 280
0
votes
0
replies
13k
views
Comment:
Comment: TCGA/Broad Institute CNV Files Segment Mean
4 months ago by
Thind amarinder
▴ 280
1
vote
0
replies
467
views
Answer:
Answer: Converting coordinates using LiftOver from GRCh37 to GRCh38
updated 5 months ago by
Pierre Lindenbaum
152k • written 5 months ago by
Thind amarinder
▴ 280
1
vote
0
replies
8.7k
views
Comment:
Comment: Methylation Analysis Tutorial in R_part1
6 months ago by
Thind amarinder
▴ 280
0
votes
1
reply
8.7k
views
Comment:
Comment: Methylation Analysis Tutorial in R_part1
6 months ago by
Thind amarinder
▴ 280
0
votes
1
reply
8.0k
views
Answer:
Answer: Detecting copy number alterations based on RNA-seq data
6 months ago by
Thind amarinder
▴ 280
0
votes
0
replies
26k
views
Comment:
Comment: Sjdboverhang Option In Star
7 months ago by
Thind amarinder
▴ 280
0
votes
0
replies
26k
views
Comment:
Comment: Sjdboverhang Option In Star
7 months ago by
Thind amarinder
▴ 280
0
votes
1
reply
26k
views
Comment:
Comment: Sjdboverhang Option In Star
7 months ago by
Thind amarinder
▴ 280
1
vote
0
replies
3.1k
views
Answer:
Answer: How to make a summary plot like below?
8 months ago by
Thind amarinder
▴ 280
0
votes
0
replies
1.1k
views
Comment:
Comment: computing chromothripsis on cancer genomes
8 months ago by
Thind amarinder
▴ 280
0
votes
1
reply
772
views
Comment:
Comment: RNA sequencing
9 months ago by
Thind amarinder
▴ 280
0
votes
1
reply
3.8k
views
Comment:
Comment: which matrix should be used to draw heatmap in RNAseq?
11 months ago by
Thind amarinder
▴ 280
0
votes
0
replies
441
views
Answer:
Answer: Ploidy in WGS samples
11 months ago by
Thind amarinder
▴ 280
0
votes
0
replies
1.6k
views
Answer:
Answer: RNA-Seq analysis and biological replicates.
12 months ago by
Thind amarinder
▴ 280
0
votes
0
replies
386
views
Comment:
Comment: Tools to detect the bacterial sequences from mouse RNA-seq data
12 months ago by
Thind amarinder
▴ 280
0
votes
0
replies
468
views
Comment:
Comment: solution for lncRNA naming issues for annotation and Functional analysis
12 months ago by
Thind amarinder
▴ 280
0
votes
2
replies
468
views
solution for lncRNA naming issues for annotation and Functional analysis
annotations
lncRNA
functional
12 months ago by
Thind amarinder
▴ 280
0
votes
0
replies
402
views
Comment:
Comment: RNA variant calling pipeline
12 months ago by
Thind amarinder
▴ 280
1
vote
1
reply
407
views
Answer:
Answer: How to quantify the viral sequencing reads from RNA-seq data?
12 months ago by
Thind amarinder
▴ 280
0
votes
0
replies
714
views
Comment:
Comment: extract copy number variation from read count file of WES
14 months ago by
Thind amarinder
▴ 280
0
votes
1
reply
714
views
Comment:
Comment: extract copy number variation from read count file of WES
14 months ago by
Thind amarinder
▴ 280
0
votes
0
replies
2.8k
views
Comment:
Comment: Which Driver-Gene Detecting Software Supports hg38?
15 months ago by
Thind amarinder
▴ 280
0
votes
0
replies
447
views
Comment:
Comment: Dataset of different timepoints of a cancers progression in the same patient?
17 months ago by
Thind amarinder
▴ 280
1
vote
0
replies
449
views
Blog:
Revisiting bulk RNA-Seq applications
TWAS
tools
Neoantigens
RNASeq
variants
6 months ago by
Thind amarinder
▴ 280
0
votes
1
reply
1.1k
views
Comment:
Comment: Liftover vs Ensembl Crossmap
21 months ago by
Thind amarinder
▴ 280
4
votes
3
replies
1.1k
views
Liftover vs Ensembl Crossmap
crossmap
liftover
converter
assembly
ensembl
21 months ago by
Thind amarinder
▴ 280
1
vote
0
replies
2.9k
views
Comment:
Comment: Are there any tutorials available for Nanostring data differential expression an
21 months ago by
Thind amarinder
▴ 280
1
vote
1
reply
2.9k
views
Answer:
Answer: Are there any tutorials available for Nanostring data differential expression an
21 months ago by
Thind amarinder
▴ 280
0
votes
0
replies
495
views
Adjustment of number of mutations of 3'UTR region for UTR length
UTR
SNV
RNA-Seq
genome
sequence
23 months ago by
Thind amarinder
▴ 280
2
votes
0
replies
7.6k
views
Answer:
Answer: Inferring genotype based on RNA sequences (RNA-seq variant calling)
updated 20 months ago by
Ram
38k • written 2.1 years ago by
Thind amarinder
▴ 280
0
votes
0
replies
4.3k
views
Comment:
C: Best Way To Measure Mirna-Seq Abundance
2.2 years ago by
Thind amarinder
▴ 280
0
votes
0
replies
619
views
interaction prediction of circRNA and miRNA and co -expression network
miRNA
circRNA
coexpression
RNA-Seq
NGS
2.2 years ago by
Thind amarinder
▴ 280
0
votes
1
reply
4.3k
views
Comment:
C: Best Way To Measure Mirna-Seq Abundance
2.2 years ago by
Thind amarinder
▴ 280
0
votes
0
replies
12k
views
Comment:
C: Bioinformatics Journal with no publishing fees?
2.2 years ago by
Thind amarinder
▴ 280
1
vote
0
replies
1.2k
views
Answer:
A: Potential Bacteria Contamination - RNA-Seq
2.2 years ago by
Thind amarinder
▴ 280
0
votes
0
replies
10k
views
Comment:
C: Gene list from bed file
2.3 years ago by
Thind amarinder
▴ 280
0
votes
0
replies
11k
views
Comment:
C: To Get All Genes Within A Genomic Region
2.3 years ago by
Thind amarinder
▴ 280
13
votes
4
replies
4.0k
views
Tutorial:
RNASeq tutorial for gene differential expression analysis
R
RNA-Seq
Transcriptomics
Tutorial
bioconductor
12 months ago by
Thind amarinder
▴ 280
0
votes
0
replies
4.0k
views
Comment:
C: RNASeq tutorial for gene differential expression analysis
2.3 years ago by
Thind amarinder
▴ 280
0
votes
0
replies
647
views
Pipeline which take care of tumor-normal contamination to correlate VAF, CNA and mRNA expression (WGS, RNASeq)
RNA-Seq
whole genome sequencing
SNV
next-gen
CNA
2.4 years ago by
Thind amarinder
▴ 280
0
votes
0
replies
1.5k
views
Comment:
Comment: How to compare gene TPM values of two different conditions obtained from differe
12 months ago by
Thind amarinder
▴ 280
1
vote
2
replies
1.5k
views
How to compare gene TPM values of two different conditions obtained from different experiments (for overview)
RNA-Seq
TPM
normalization
12 months ago by
Thind amarinder
▴ 280
0
votes
2
replies
4.0k
views
Comment:
C: RNASeq tutorial for gene differential expression analysis
2.4 years ago by
Thind amarinder
▴ 280
0
votes
0
replies
44k
views
Comment:
C: PCA plot from read count matrix from RNA-Seq
2.5 years ago by
Thind amarinder
▴ 280
0
votes
0
replies
3.2k
views
Answer:
A: PHYLIP to MEGA converter
2.5 years ago by
Thind amarinder
▴ 280
0
votes
0
replies
3.4k
views
Answer:
A: error in file conversion with mega software
2.5 years ago by
Thind amarinder
▴ 280
1
vote
0
replies
821
views
Comment:
C: Meta Analysis on RNA-seq data
2.5 years ago by
Thind amarinder
▴ 280
0
votes
1
reply
720
views
Comment:
C: ceRNA network identification
2.5 years ago by
Thind amarinder
▴ 280
0
votes
0
replies
549
views
query regarding miRNA-mRNA co-expression analysis
co-expression
RNA-Seq
transcriptomics
R
next-gen
2.5 years ago by
Thind amarinder
▴ 280
93 results • Page
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