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128
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How to use conumee segment mean for gistic input
genomics gistic NGS methylation conumee
4 months ago by Thind amarinder ▴ 280
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13k
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Comment: Comment: TCGA/Broad Institute CNV Files Segment Mean
4 months ago by Thind amarinder ▴ 280
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467
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Answer: Answer: Converting coordinates using LiftOver from GRCh37 to GRCh38
updated 5 months ago by 152k • written 5 months ago by ▴ 280
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8.7k
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Comment: Comment: Methylation Analysis Tutorial in R_part1
6 months ago by Thind amarinder ▴ 280
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1
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8.7k
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Comment: Comment: Methylation Analysis Tutorial in R_part1
6 months ago by Thind amarinder ▴ 280
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1
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8.0k
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Answer: Answer: Detecting copy number alterations based on RNA-seq data
6 months ago by Thind amarinder ▴ 280
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26k
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Comment: Comment: Sjdboverhang Option In Star
7 months ago by Thind amarinder ▴ 280
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26k
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Comment: Comment: Sjdboverhang Option In Star
7 months ago by Thind amarinder ▴ 280
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1
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26k
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Comment: Comment: Sjdboverhang Option In Star
7 months ago by Thind amarinder ▴ 280
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3.1k
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Answer: Answer: How to make a summary plot like below?
8 months ago by Thind amarinder ▴ 280
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1.1k
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Comment: Comment: computing chromothripsis on cancer genomes
8 months ago by Thind amarinder ▴ 280
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1
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772
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Comment: Comment: RNA sequencing
9 months ago by Thind amarinder ▴ 280
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1
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3.8k
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Comment: Comment: which matrix should be used to draw heatmap in RNAseq?
11 months ago by Thind amarinder ▴ 280
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441
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Answer: Answer: Ploidy in WGS samples
11 months ago by Thind amarinder ▴ 280
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1.6k
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Answer: Answer: RNA-Seq analysis and biological replicates.
12 months ago by Thind amarinder ▴ 280
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0
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386
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Comment: Comment: Tools to detect the bacterial sequences from mouse RNA-seq data
12 months ago by Thind amarinder ▴ 280
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468
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Comment: Comment: solution for lncRNA naming issues for annotation and Functional analysis
12 months ago by Thind amarinder ▴ 280
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2
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468
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solution for lncRNA naming issues for annotation and Functional analysis
annotations lncRNA functional
12 months ago by Thind amarinder ▴ 280
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0
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402
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Comment: Comment: RNA variant calling pipeline
12 months ago by Thind amarinder ▴ 280
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1
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407
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Answer: Answer: How to quantify the viral sequencing reads from RNA-seq data?
12 months ago by Thind amarinder ▴ 280
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0
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714
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Comment: Comment: extract copy number variation from read count file of WES
14 months ago by Thind amarinder ▴ 280
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1
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714
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Comment: Comment: extract copy number variation from read count file of WES
14 months ago by Thind amarinder ▴ 280
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2.8k
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Comment: Comment: Which Driver-Gene Detecting Software Supports hg38?
15 months ago by Thind amarinder ▴ 280
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447
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Comment: Comment: Dataset of different timepoints of a cancers progression in the same patient?
17 months ago by Thind amarinder ▴ 280
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0
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449
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Blog: Revisiting bulk RNA-Seq applications
TWAS tools Neoantigens RNASeq variants
6 months ago by Thind amarinder ▴ 280
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1
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1.1k
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Comment: Comment: Liftover vs Ensembl Crossmap
21 months ago by Thind amarinder ▴ 280
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3
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1.1k
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Liftover vs Ensembl Crossmap
crossmap liftover converter assembly ensembl
21 months ago by Thind amarinder ▴ 280
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0
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2.9k
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Comment: Comment: Are there any tutorials available for Nanostring data differential expression an
21 months ago by Thind amarinder ▴ 280
1
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1
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2.9k
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Answer: Answer: Are there any tutorials available for Nanostring data differential expression an
21 months ago by Thind amarinder ▴ 280
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0
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495
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Adjustment of number of mutations of 3'UTR region for UTR length
UTR SNV RNA-Seq genome sequence
23 months ago by Thind amarinder ▴ 280
2
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0
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7.6k
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Answer: Answer: Inferring genotype based on RNA sequences (RNA-seq variant calling)
updated 20 months ago by 38k • written 2.1 years ago by ▴ 280
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4.3k
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Comment: C: Best Way To Measure Mirna-Seq Abundance
2.2 years ago by Thind amarinder ▴ 280
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0
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619
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interaction prediction of circRNA and miRNA and co -expression network
miRNA circRNA coexpression RNA-Seq NGS
2.2 years ago by Thind amarinder ▴ 280
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1
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4.3k
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Comment: C: Best Way To Measure Mirna-Seq Abundance
2.2 years ago by Thind amarinder ▴ 280
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0
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12k
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Comment: C: Bioinformatics Journal with no publishing fees?
2.2 years ago by Thind amarinder ▴ 280
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1.2k
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Answer: A: Potential Bacteria Contamination - RNA-Seq
2.2 years ago by Thind amarinder ▴ 280
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10k
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Comment: C: Gene list from bed file
2.3 years ago by Thind amarinder ▴ 280
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0
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11k
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Comment: C: To Get All Genes Within A Genomic Region
2.3 years ago by Thind amarinder ▴ 280
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4
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4.0k
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Tutorial: RNASeq tutorial for gene differential expression analysis
R RNA-Seq Transcriptomics Tutorial bioconductor
12 months ago by Thind amarinder ▴ 280
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0
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4.0k
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Comment: C: RNASeq tutorial for gene differential expression analysis
2.3 years ago by Thind amarinder ▴ 280
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0
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647
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Pipeline which take care of tumor-normal contamination to correlate VAF, CNA and mRNA expression (WGS, RNASeq)
RNA-Seq whole genome sequencing SNV next-gen CNA
2.4 years ago by Thind amarinder ▴ 280
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0
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1.5k
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Comment: Comment: How to compare gene TPM values of two different conditions obtained from differe
12 months ago by Thind amarinder ▴ 280
1
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2
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1.5k
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How to compare gene TPM values of two different conditions obtained from different experiments (for overview)
RNA-Seq TPM normalization
12 months ago by Thind amarinder ▴ 280
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2
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4.0k
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Comment: C: RNASeq tutorial for gene differential expression analysis
2.4 years ago by Thind amarinder ▴ 280
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0
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44k
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Comment: C: PCA plot from read count matrix from RNA-Seq
2.5 years ago by Thind amarinder ▴ 280
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3.2k
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Answer: A: PHYLIP to MEGA converter
2.5 years ago by Thind amarinder ▴ 280
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0
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3.4k
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Answer: A: error in file conversion with mega software
2.5 years ago by Thind amarinder ▴ 280
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0
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821
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Comment: C: Meta Analysis on RNA-seq data
2.5 years ago by Thind amarinder ▴ 280
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1
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720
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Comment: C: ceRNA network identification
2.5 years ago by Thind amarinder ▴ 280
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0
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549
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query regarding miRNA-mRNA co-expression analysis
co-expression RNA-Seq transcriptomics R next-gen
2.5 years ago by Thind amarinder ▴ 280
93 results • Page 1 of 2
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