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Comment: Comment: 44% Successfully Assigned Fragments with featureCounts after 85% uniquely mapped
8 months ago by Thind amarinder ▴ 340
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696
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Answer: Answer: Is it possible to use RSEM with BAM files from STAR alignment?
9 months ago by Thind amarinder ▴ 340
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845
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Comment: Comment: How to use conumee segment mean for gistic input
13 months ago by Thind amarinder ▴ 340
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1.8k
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Comment: Comment: Generating Positional List from VCF
15 months ago by Thind amarinder ▴ 340
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2
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845
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How to use conumee segment mean for gistic input
genomics gistic NGS methylation conumee
13 months ago by Thind amarinder ▴ 340
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1
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16k
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Comment: Comment: TCGA/Broad Institute CNV Files Segment Mean
2.4 years ago by Thind amarinder ▴ 340
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2.0k
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Answer: Answer: Converting coordinates using LiftOver from GRCh37 to GRCh38
updated 2.4 years ago by 165k • written 2.4 years ago by ▴ 340
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18k
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Comment: Comment: Methylation Analysis Tutorial in R_part1
2.5 years ago by Thind amarinder ▴ 340
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1
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18k
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Comment: Comment: Methylation Analysis Tutorial in R_part1
2.5 years ago by Thind amarinder ▴ 340
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1
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11k
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Answer: Answer: Detecting copy number alterations based on RNA-seq data
2.5 years ago by Thind amarinder ▴ 340
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36k
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Comment: Comment: Sjdboverhang Option In Star
2.6 years ago by Thind amarinder ▴ 340
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36k
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Comment: Comment: Sjdboverhang Option In Star
2.6 years ago by Thind amarinder ▴ 340
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1
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36k
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Comment: Comment: Sjdboverhang Option In Star
2.6 years ago by Thind amarinder ▴ 340
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8.4k
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Answer: Answer: How to make a summary plot like below?
2.7 years ago by Thind amarinder ▴ 340
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1.7k
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Comment: Comment: computing chromothripsis on cancer genomes
2.7 years ago by Thind amarinder ▴ 340
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1
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1.4k
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Comment: Comment: RNA sequencing
2.7 years ago by Thind amarinder ▴ 340
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1
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6.4k
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Comment: Comment: which matrix should be used to draw heatmap in RNAseq?
2.9 years ago by Thind amarinder ▴ 340
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917
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Answer: Answer: Ploidy in WGS samples
2.9 years ago by Thind amarinder ▴ 340
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2.1k
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Answer: Answer: RNA-Seq analysis and biological replicates.
3.0 years ago by Thind amarinder ▴ 340
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0
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708
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Comment: Comment: Tools to detect the bacterial sequences from mouse RNA-seq data
3.0 years ago by Thind amarinder ▴ 340
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886
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Comment: Comment: solution for lncRNA naming issues for annotation and Functional analysis
3.0 years ago by Thind amarinder ▴ 340
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2
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886
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solution for lncRNA naming issues for annotation and Functional analysis
annotations lncRNA functional
3.0 years ago by Thind amarinder ▴ 340
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0
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820
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Comment: Comment: RNA variant calling pipeline
3.0 years ago by Thind amarinder ▴ 340
1
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1
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847
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Answer: Answer: How to quantify the viral sequencing reads from RNA-seq data?
3.0 years ago by Thind amarinder ▴ 340
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1.3k
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Comment: Comment: extract copy number variation from read count file of WES
3.1 years ago by Thind amarinder ▴ 340
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1
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1.3k
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Comment: Comment: extract copy number variation from read count file of WES
3.1 years ago by Thind amarinder ▴ 340
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4.7k
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Comment: Comment: Which Driver-Gene Detecting Software Supports hg38?
3.2 years ago by Thind amarinder ▴ 340
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0
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764
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Comment: Comment: Dataset of different timepoints of a cancers progression in the same patient?
3.4 years ago by Thind amarinder ▴ 340
1
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0
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822
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Blog: Revisiting bulk RNA-Seq applications
RNASeq variants TWAS Neoantigens
updated 19 months ago by 44k • written 3.5 years ago by ▴ 340
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1
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2.2k
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Comment: Comment: Liftover vs Ensembl Crossmap
3.7 years ago by Thind amarinder ▴ 340
4
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3
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2.2k
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Liftover vs Ensembl Crossmap
crossmap liftover converter assembly ensembl
3.7 years ago by Thind amarinder ▴ 340
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4.6k
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Comment: Comment: Are there any tutorials available for Nanostring data differential expression an
3.7 years ago by Thind amarinder ▴ 340
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1
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4.6k
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Answer: Answer: Are there any tutorials available for Nanostring data differential expression an
3.7 years ago by Thind amarinder ▴ 340
0
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0
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736
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Adjustment of number of mutations of 3'UTR region for UTR length
UTR SNV RNA-Seq genome sequence
3.9 years ago by Thind amarinder ▴ 340
3
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9.8k
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Answer: Answer: Inferring genotype based on RNA sequences (RNA-seq variant calling)
updated 3.7 years ago by 44k • written 4.1 years ago by ▴ 340
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5.0k
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Comment: C: Best Way To Measure Mirna-Seq Abundance
4.1 years ago by Thind amarinder ▴ 340
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0
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899
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interaction prediction of circRNA and miRNA and co -expression network
miRNA circRNA coexpression RNA-Seq NGS
4.1 years ago by Thind amarinder ▴ 340
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1
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5.0k
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Comment: C: Best Way To Measure Mirna-Seq Abundance
4.1 years ago by Thind amarinder ▴ 340
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0
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14k
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Comment: C: Bioinformatics Journal with no publishing fees?
4.2 years ago by Thind amarinder ▴ 340
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2.2k
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Answer: A: Potential Bacteria Contamination - RNA-Seq
4.2 years ago by Thind amarinder ▴ 340
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0
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14k
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Comment: C: Gene list from bed file
4.2 years ago by Thind amarinder ▴ 340
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13k
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Comment: C: To Get All Genes Within A Genomic Region
4.3 years ago by Thind amarinder ▴ 340
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4
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4.9k
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Tutorial: RNASeq tutorial for gene differential expression analysis
Transcriptomics bioconductor RNA-Seq R
updated 22 months ago by 44k • written 4.5 years ago by ▴ 340
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0
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4.9k
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Comment: C: RNASeq tutorial for gene differential expression analysis
4.3 years ago by Thind amarinder ▴ 340
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0
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1.0k
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Pipeline which take care of tumor-normal contamination to correlate VAF, CNA and mRNA expression (WGS, RNASeq)
RNA-Seq whole genome sequencing SNV next-gen CNA
4.3 years ago by Thind amarinder ▴ 340
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0
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2.4k
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Comment: Comment: How to compare gene TPM values of two different conditions obtained from differe
3.0 years ago by Thind amarinder ▴ 340
2
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2
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2.4k
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How to compare gene TPM values of two different conditions obtained from different experiments (for overview)
RNA-Seq TPM normalization
3.0 years ago by Thind amarinder ▴ 340
0
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2
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4.9k
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Comment: C: RNASeq tutorial for gene differential expression analysis
4.4 years ago by Thind amarinder ▴ 340
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0
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57k
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Comment: C: PCA plot from read count matrix from RNA-Seq
4.4 years ago by Thind amarinder ▴ 340
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0
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4.0k
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Answer: A: PHYLIP to MEGA converter
4.4 years ago by Thind amarinder ▴ 340
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