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How to use conumee segment mean for gistic input
genomics gistic NGS methylation conumee
8 months ago by Thind amarinder ▴ 310
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14k
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Comment: Comment: TCGA/Broad Institute CNV Files Segment Mean
8 months ago by Thind amarinder ▴ 310
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770
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Answer: Answer: Converting coordinates using LiftOver from GRCh37 to GRCh38
updated 9 months ago by 154k • written 9 months ago by ▴ 310
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10k
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Comment: Comment: Methylation Analysis Tutorial in R_part1
10 months ago by Thind amarinder ▴ 310
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1
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10k
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Comment: Comment: Methylation Analysis Tutorial in R_part1
10 months ago by Thind amarinder ▴ 310
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1
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8.6k
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Answer: Answer: Detecting copy number alterations based on RNA-seq data
10 months ago by Thind amarinder ▴ 310
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28k
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Comment: Comment: Sjdboverhang Option In Star
11 months ago by Thind amarinder ▴ 310
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28k
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Comment: Comment: Sjdboverhang Option In Star
11 months ago by Thind amarinder ▴ 310
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1
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28k
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Comment: Comment: Sjdboverhang Option In Star
11 months ago by Thind amarinder ▴ 310
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4.2k
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Answer: Answer: How to make a summary plot like below?
12 months ago by Thind amarinder ▴ 310
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1.2k
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Comment: Comment: computing chromothripsis on cancer genomes
12 months ago by Thind amarinder ▴ 310
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1
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856
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Comment: Comment: RNA sequencing
12 months ago by Thind amarinder ▴ 310
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1
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4.2k
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Comment: Comment: which matrix should be used to draw heatmap in RNAseq?
15 months ago by Thind amarinder ▴ 310
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506
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Answer: Answer: Ploidy in WGS samples
15 months ago by Thind amarinder ▴ 310
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1.6k
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Answer: Answer: RNA-Seq analysis and biological replicates.
16 months ago by Thind amarinder ▴ 310
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434
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Comment: Comment: Tools to detect the bacterial sequences from mouse RNA-seq data
16 months ago by Thind amarinder ▴ 310
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519
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Comment: Comment: solution for lncRNA naming issues for annotation and Functional analysis
16 months ago by Thind amarinder ▴ 310
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2
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519
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solution for lncRNA naming issues for annotation and Functional analysis
annotations lncRNA functional
16 months ago by Thind amarinder ▴ 310
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0
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453
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Comment: Comment: RNA variant calling pipeline
16 months ago by Thind amarinder ▴ 310
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1
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462
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Answer: Answer: How to quantify the viral sequencing reads from RNA-seq data?
16 months ago by Thind amarinder ▴ 310
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803
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Comment: Comment: extract copy number variation from read count file of WES
18 months ago by Thind amarinder ▴ 310
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1
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803
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Comment: Comment: extract copy number variation from read count file of WES
18 months ago by Thind amarinder ▴ 310
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3.1k
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Comment: Comment: Which Driver-Gene Detecting Software Supports hg38?
19 months ago by Thind amarinder ▴ 310
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490
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Comment: Comment: Dataset of different timepoints of a cancers progression in the same patient?
21 months ago by Thind amarinder ▴ 310
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527
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Blog: Revisiting bulk RNA-Seq applications
TWAS tools Neoantigens RNASeq variants
9 months ago by Thind amarinder ▴ 310
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1
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1.3k
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Comment: Comment: Liftover vs Ensembl Crossmap
2.1 years ago by Thind amarinder ▴ 310
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3
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1.3k
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Liftover vs Ensembl Crossmap
crossmap liftover converter assembly ensembl
2.1 years ago by Thind amarinder ▴ 310
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0
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3.3k
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Comment: Comment: Are there any tutorials available for Nanostring data differential expression an
2.1 years ago by Thind amarinder ▴ 310
1
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1
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3.3k
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Answer: Answer: Are there any tutorials available for Nanostring data differential expression an
2.1 years ago by Thind amarinder ▴ 310
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0
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521
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Adjustment of number of mutations of 3'UTR region for UTR length
UTR SNV RNA-Seq genome sequence
2.3 years ago by Thind amarinder ▴ 310
2
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0
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8.1k
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Answer: Answer: Inferring genotype based on RNA sequences (RNA-seq variant calling)
updated 2.0 years ago by 39k • written 2.5 years ago by ▴ 310
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4.4k
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Comment: C: Best Way To Measure Mirna-Seq Abundance
2.5 years ago by Thind amarinder ▴ 310
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0
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656
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interaction prediction of circRNA and miRNA and co -expression network
miRNA circRNA coexpression RNA-Seq NGS
2.5 years ago by Thind amarinder ▴ 310
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1
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4.4k
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Comment: C: Best Way To Measure Mirna-Seq Abundance
2.5 years ago by Thind amarinder ▴ 310
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0
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12k
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Comment: C: Bioinformatics Journal with no publishing fees?
2.5 years ago by Thind amarinder ▴ 310
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1.4k
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Answer: A: Potential Bacteria Contamination - RNA-Seq
2.6 years ago by Thind amarinder ▴ 310
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11k
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Comment: C: Gene list from bed file
2.6 years ago by Thind amarinder ▴ 310
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11k
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Comment: C: To Get All Genes Within A Genomic Region
2.6 years ago by Thind amarinder ▴ 310
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4
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4.2k
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Tutorial: RNASeq tutorial for gene differential expression analysis
Transcriptomics bioconductor RNA-Seq R
updated 11 weeks ago by 39k • written 2.8 years ago by ▴ 310
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0
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4.2k
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Comment: C: RNASeq tutorial for gene differential expression analysis
2.7 years ago by Thind amarinder ▴ 310
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0
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690
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Pipeline which take care of tumor-normal contamination to correlate VAF, CNA and mRNA expression (WGS, RNASeq)
RNA-Seq whole genome sequencing SNV next-gen CNA
2.7 years ago by Thind amarinder ▴ 310
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0
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1.7k
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Comment: Comment: How to compare gene TPM values of two different conditions obtained from differe
16 months ago by Thind amarinder ▴ 310
1
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2
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1.7k
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How to compare gene TPM values of two different conditions obtained from different experiments (for overview)
RNA-Seq TPM normalization
16 months ago by Thind amarinder ▴ 310
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2
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4.2k
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Comment: C: RNASeq tutorial for gene differential expression analysis
2.7 years ago by Thind amarinder ▴ 310
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0
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46k
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Comment: C: PCA plot from read count matrix from RNA-Seq
2.8 years ago by Thind amarinder ▴ 310
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0
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3.4k
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Answer: A: PHYLIP to MEGA converter
2.8 years ago by Thind amarinder ▴ 310
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0
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3.6k
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Answer: A: error in file conversion with mega software
2.8 years ago by Thind amarinder ▴ 310
1
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0
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873
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Comment: C: Meta Analysis on RNA-seq data
2.8 years ago by Thind amarinder ▴ 310
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1
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771
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Comment: C: ceRNA network identification
2.8 years ago by Thind amarinder ▴ 310
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0
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585
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query regarding miRNA-mRNA co-expression analysis
co-expression RNA-Seq transcriptomics R next-gen
2.9 years ago by Thind amarinder ▴ 310
93 results • Page 1 of 2
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