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183
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How to use conumee segment mean for gistic input
genomics
gistic
NGS
methylation
conumee
8 months ago by
Thind amarinder
▴ 310
0
votes
0
replies
14k
views
Comment:
Comment: TCGA/Broad Institute CNV Files Segment Mean
8 months ago by
Thind amarinder
▴ 310
1
vote
0
replies
770
views
Answer:
Answer: Converting coordinates using LiftOver from GRCh37 to GRCh38
updated 9 months ago by
Pierre Lindenbaum
154k • written 9 months ago by
Thind amarinder
▴ 310
1
vote
0
replies
10k
views
Comment:
Comment: Methylation Analysis Tutorial in R_part1
10 months ago by
Thind amarinder
▴ 310
0
votes
1
reply
10k
views
Comment:
Comment: Methylation Analysis Tutorial in R_part1
10 months ago by
Thind amarinder
▴ 310
0
votes
1
reply
8.6k
views
Answer:
Answer: Detecting copy number alterations based on RNA-seq data
10 months ago by
Thind amarinder
▴ 310
0
votes
0
replies
28k
views
Comment:
Comment: Sjdboverhang Option In Star
11 months ago by
Thind amarinder
▴ 310
0
votes
0
replies
28k
views
Comment:
Comment: Sjdboverhang Option In Star
11 months ago by
Thind amarinder
▴ 310
0
votes
1
reply
28k
views
Comment:
Comment: Sjdboverhang Option In Star
11 months ago by
Thind amarinder
▴ 310
1
vote
0
replies
4.2k
views
Answer:
Answer: How to make a summary plot like below?
12 months ago by
Thind amarinder
▴ 310
0
votes
0
replies
1.2k
views
Comment:
Comment: computing chromothripsis on cancer genomes
12 months ago by
Thind amarinder
▴ 310
0
votes
1
reply
856
views
Comment:
Comment: RNA sequencing
12 months ago by
Thind amarinder
▴ 310
0
votes
1
reply
4.2k
views
Comment:
Comment: which matrix should be used to draw heatmap in RNAseq?
15 months ago by
Thind amarinder
▴ 310
0
votes
0
replies
506
views
Answer:
Answer: Ploidy in WGS samples
15 months ago by
Thind amarinder
▴ 310
0
votes
0
replies
1.6k
views
Answer:
Answer: RNA-Seq analysis and biological replicates.
16 months ago by
Thind amarinder
▴ 310
0
votes
0
replies
434
views
Comment:
Comment: Tools to detect the bacterial sequences from mouse RNA-seq data
16 months ago by
Thind amarinder
▴ 310
0
votes
0
replies
519
views
Comment:
Comment: solution for lncRNA naming issues for annotation and Functional analysis
16 months ago by
Thind amarinder
▴ 310
0
votes
2
replies
519
views
solution for lncRNA naming issues for annotation and Functional analysis
annotations
lncRNA
functional
16 months ago by
Thind amarinder
▴ 310
0
votes
0
replies
453
views
Comment:
Comment: RNA variant calling pipeline
16 months ago by
Thind amarinder
▴ 310
1
vote
1
reply
462
views
Answer:
Answer: How to quantify the viral sequencing reads from RNA-seq data?
16 months ago by
Thind amarinder
▴ 310
0
votes
0
replies
803
views
Comment:
Comment: extract copy number variation from read count file of WES
18 months ago by
Thind amarinder
▴ 310
0
votes
1
reply
803
views
Comment:
Comment: extract copy number variation from read count file of WES
18 months ago by
Thind amarinder
▴ 310
0
votes
0
replies
3.1k
views
Comment:
Comment: Which Driver-Gene Detecting Software Supports hg38?
19 months ago by
Thind amarinder
▴ 310
0
votes
0
replies
490
views
Comment:
Comment: Dataset of different timepoints of a cancers progression in the same patient?
21 months ago by
Thind amarinder
▴ 310
1
vote
0
replies
527
views
Blog:
Revisiting bulk RNA-Seq applications
TWAS
tools
Neoantigens
RNASeq
variants
9 months ago by
Thind amarinder
▴ 310
0
votes
1
reply
1.3k
views
Comment:
Comment: Liftover vs Ensembl Crossmap
2.1 years ago by
Thind amarinder
▴ 310
4
votes
3
replies
1.3k
views
Liftover vs Ensembl Crossmap
crossmap
liftover
converter
assembly
ensembl
2.1 years ago by
Thind amarinder
▴ 310
1
vote
0
replies
3.3k
views
Comment:
Comment: Are there any tutorials available for Nanostring data differential expression an
2.1 years ago by
Thind amarinder
▴ 310
1
vote
1
reply
3.3k
views
Answer:
Answer: Are there any tutorials available for Nanostring data differential expression an
2.1 years ago by
Thind amarinder
▴ 310
0
votes
0
replies
521
views
Adjustment of number of mutations of 3'UTR region for UTR length
UTR
SNV
RNA-Seq
genome
sequence
2.3 years ago by
Thind amarinder
▴ 310
2
votes
0
replies
8.1k
views
Answer:
Answer: Inferring genotype based on RNA sequences (RNA-seq variant calling)
updated 2.0 years ago by
Ram
39k • written 2.5 years ago by
Thind amarinder
▴ 310
0
votes
0
replies
4.4k
views
Comment:
C: Best Way To Measure Mirna-Seq Abundance
2.5 years ago by
Thind amarinder
▴ 310
0
votes
0
replies
656
views
interaction prediction of circRNA and miRNA and co -expression network
miRNA
circRNA
coexpression
RNA-Seq
NGS
2.5 years ago by
Thind amarinder
▴ 310
0
votes
1
reply
4.4k
views
Comment:
C: Best Way To Measure Mirna-Seq Abundance
2.5 years ago by
Thind amarinder
▴ 310
0
votes
0
replies
12k
views
Comment:
C: Bioinformatics Journal with no publishing fees?
2.5 years ago by
Thind amarinder
▴ 310
1
vote
0
replies
1.4k
views
Answer:
A: Potential Bacteria Contamination - RNA-Seq
2.6 years ago by
Thind amarinder
▴ 310
0
votes
0
replies
11k
views
Comment:
C: Gene list from bed file
2.6 years ago by
Thind amarinder
▴ 310
0
votes
0
replies
11k
views
Comment:
C: To Get All Genes Within A Genomic Region
2.6 years ago by
Thind amarinder
▴ 310
15
votes
4
replies
4.2k
views
Tutorial:
RNASeq tutorial for gene differential expression analysis
Transcriptomics
bioconductor
RNA-Seq
R
updated 11 weeks ago by
Ram
39k • written 2.8 years ago by
Thind amarinder
▴ 310
0
votes
0
replies
4.2k
views
Comment:
C: RNASeq tutorial for gene differential expression analysis
2.7 years ago by
Thind amarinder
▴ 310
0
votes
0
replies
690
views
Pipeline which take care of tumor-normal contamination to correlate VAF, CNA and mRNA expression (WGS, RNASeq)
RNA-Seq
whole genome sequencing
SNV
next-gen
CNA
2.7 years ago by
Thind amarinder
▴ 310
0
votes
0
replies
1.7k
views
Comment:
Comment: How to compare gene TPM values of two different conditions obtained from differe
16 months ago by
Thind amarinder
▴ 310
1
vote
2
replies
1.7k
views
How to compare gene TPM values of two different conditions obtained from different experiments (for overview)
RNA-Seq
TPM
normalization
16 months ago by
Thind amarinder
▴ 310
0
votes
2
replies
4.2k
views
Comment:
C: RNASeq tutorial for gene differential expression analysis
2.7 years ago by
Thind amarinder
▴ 310
0
votes
0
replies
46k
views
Comment:
C: PCA plot from read count matrix from RNA-Seq
2.8 years ago by
Thind amarinder
▴ 310
0
votes
0
replies
3.4k
views
Answer:
A: PHYLIP to MEGA converter
2.8 years ago by
Thind amarinder
▴ 310
0
votes
0
replies
3.6k
views
Answer:
A: error in file conversion with mega software
2.8 years ago by
Thind amarinder
▴ 310
1
vote
0
replies
873
views
Comment:
C: Meta Analysis on RNA-seq data
2.8 years ago by
Thind amarinder
▴ 310
0
votes
1
reply
771
views
Comment:
C: ceRNA network identification
2.8 years ago by
Thind amarinder
▴ 310
0
votes
0
replies
585
views
query regarding miRNA-mRNA co-expression analysis
co-expression
RNA-Seq
transcriptomics
R
next-gen
2.9 years ago by
Thind amarinder
▴ 310
93 results • Page
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