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Quality control of the X-chromosome for use in a GWAS using REGENIE
REGENIE
GWAS
LMM
chromosome-X
quality-control
13 months ago by
ucbtep
▴ 20
6
votes
4
replies
970
views
GWAS: population covariates - should the x-chromosome in addition to autosomes?
autosomes
X-chromosome
GWAS
population-covariates
updated 15 months ago by
LChart
3.9k • written 15 months ago by
ucbtep
▴ 20
1
vote
3
replies
1.1k
views
PCA projection with --score plink2.sscore output: what are the ALLELE_CT & NAMED_ALLELE_DOSAGE_SUM showing?
pca-projection
allele-dosage
score
plink2
updated 15 months ago by
chrchang523
10k • written 15 months ago by
ucbtep
▴ 20
0
votes
0
replies
402
views
Can LMM GWAS handle unequal sample sizes for ancestry?
related
GWAS
regenie
LMM
population-structure
16 months ago by
ucbtep
▴ 20
3
votes
1
reply
478
views
LMM GWAS - why are population covariates included?
LMM
GWAS
population-covariates
updated 16 months ago by
Ram
43k • written 16 months ago by
ucbtep
▴ 20
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