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Small DNA-seq read files for tests
dna-seq next-gen
5.5 years ago by chefarov ▴ 170
3
votes
2
replies
2.0k
views
Is there a DNA de-novo assembler parallelized for PBS/torque environment?
PBS de-novo-assembly torque
updated 2.2 years ago by 43k • written 9.4 years ago by ▴ 170
27
votes
7
replies
31k
views
Is Paired End analysis possible with FASTQC?
dna-seq QC paired-end fastqc
updated 15 months ago by 43k • written 8.0 years ago by ▴ 170
2
votes
1
reply
1.5k
views
bowtie2 messes up headers with sequences in output
bowtie2 sam
updated 6.4 years ago by ★ 3.8k • written 6.4 years ago by ▴ 170
6
votes
6
replies
2.7k
views
SAM/BAM: Extract sequences which aligned once and also don't overlap with any other sequence
sam bam alignment bowtie2 samtools
6.4 years ago by chefarov ▴ 170
2
votes
1
reply
1.3k
views
what happens when blast is run with default query "-"?
blast blastx
6.5 years ago by chefarov ▴ 170
6
votes
8
replies
2.1k
views
From evidence-based alignments on de-novo assembly, to gene identification
gene-prediction de-novo next-gen alignment gene
6.6 years ago by chefarov ▴ 170
6
votes
4
replies
3.2k
views
De-Novo Assembly pipeline on hadoop
next-gen rna-seq hadoop Assembly dna-seq
updated 2.3 years ago by 43k • written 9.5 years ago by ▴ 170
0
votes
0
replies
1.9k
views
Clustering Blast overlapping alignments
gene-prediction blast sequence dna-seq alignment
updated 19 months ago by 43k • written 8.7 years ago by ▴ 170
3
votes
4
replies
2.2k
views
DNA de-novo assembly for plants different than rest organisms?
de-novo-assembly dna-assembly plants
updated 2.3 years ago by 43k • written 9.5 years ago by ▴ 170
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