User: sbdk82
sbdk82 • 30
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Posts by sbdk82
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... Thanks !! I will try them ...
written 8 days ago by
sbdk82 • 30
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... I am trying to align and extend some sequences to get a larger consensus sequence. Here is a toy example of my problem
ACTTACTGTAGTAGA
GTA-AGATGCGATGAGGAGAT-GAGAAATG
GATG--ATGAGGAGATAGAGAAATGATTATA
----------------------------------------------
AC ...
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... It worked fine except the BAM files generated by [LAST][1]
[1]: http://last.cbrc.jp/ ...
written 24 days ago by
sbdk82 • 30
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... Yes, it is from nanopore. I am trying to align naopore reads against both illumina and Pacbio contigs ...
written 24 days ago by
sbdk82 • 30
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... I am using BWA to align the raw reads against a contig set. I would like to know the overall mismatch rate as well as indels in the entire alignment (SAM/BAM). I tried various options of samtools/bamtools, but could not able to find this. ...
written 24 days ago by
sbdk82 • 30
• updated
24 days ago by
prasundutta87 • 110
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... Is there an executable? I am getting error while compiling. ...
written 24 days ago by
sbdk82 • 30
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... I am still getting a blank file. Please check the last two lines of sam file ...
written 24 days ago by
sbdk82 • 30
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... 0d6893dc-57eb-4eaa-a1ad-406b4528cc6f 0 c12692/f5p5/989 132 60 10S12M1D30M2I9M1I6M2D39M1I10M2I6M1D17M1D12M1D1M2D11M1D10M1I12M1I67M4I21M2D24M2I11M3D18M1I24M1D26M1D11M5D26M1I8M1D2M1D22M1D4M2D25M1D8M1D2M2D33M1D15M4I12M1D22M2I23M2D6M1D4M2D10M1I25M3I5M3I2M1I7M1I22M4I10M3I11M6I4M1I11M1I5M2I4M2I3M1I4M3I ...
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... You can check this new paper recently published http://www.cell.com/molecular-plant/abstract/S1674-2052(17)30166-1 ...
written 9 weeks ago by
sbdk82 • 30
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... check this new paper http://www.cell.com/molecular-plant/abstract/S1674-2052(17)30166-1 ...
written 9 weeks ago by
sbdk82 • 30
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