User: sbdk82

gravatar for sbdk82
sbdk8230
Reputation:
30
Status:
New User
Location:
United States
Last seen:
2 months, 1 week ago
Joined:
3 years, 4 months ago
Email:
s*****@gmail.com

Posts by sbdk82

<prev • 41 results • page 1 of 5 • next >
0
votes
1
answer
158
views
1
answers
Comment: C: Consensus by aligning and extending the sequences
... Thanks !! I will try them ...
written 9 weeks ago by sbdk8230
0
votes
1
answer
158
views
1
answer
Consensus by aligning and extending the sequences
... I am trying to align and extend some sequences to get a larger consensus sequence. Here is a toy example of my problem ACTTACTGTAGTAGA GTA-AGATGCGATGAGGAGAT-GAGAAATG GATG--ATGAGGAGATAGAGAAATGATTATA ---------------------------------------------- AC ...
fasta alignment msa written 9 weeks ago by sbdk8230 • updated 9 weeks ago by h.mon9.2k
0
votes
2
answers
659
views
2
answers
Comment: C: Mismatch and Indel statistics from BAM/SAM file
... It worked fine except the BAM files generated by [LAST][1] [1]: http://last.cbrc.jp/ ...
written 11 weeks ago by sbdk8230
0
votes
2
answers
659
views
2
answers
Comment: C: Mismatch and Indel statistics from BAM/SAM file
... Yes, it is from nanopore. I am trying to align naopore reads against both illumina and Pacbio contigs ...
written 11 weeks ago by sbdk8230
1
vote
1
answer
218
views
1
answer
Mismatch and Indel rate in alignment
... I am using BWA to align the raw reads against a contig set. I would like to know the overall mismatch rate as well as indels in the entire alignment (SAM/BAM). I tried various options of samtools/bamtools, but could not able to find this. ...
alignment sam bam written 11 weeks ago by sbdk8230 • updated 11 weeks ago by prasundutta87150
0
votes
2
answers
659
views
2
answers
Comment: C: Mismatch and Indel statistics from BAM/SAM file
... Is there an executable? I am getting error while compiling. ...
written 11 weeks ago by sbdk8230
0
votes
2
answers
659
views
2
answers
Comment: C: Mismatch and Indel statistics from BAM/SAM file
... I am still getting a blank file. Please check the last two lines of sam file ...
written 11 weeks ago by sbdk8230
0
votes
2
answers
659
views
2
answers
Comment: C: Mismatch and Indel statistics from BAM/SAM file
... 0d6893dc-57eb-4eaa-a1ad-406b4528cc6f 0 c12692/f5p5/989 132 60 10S12M1D30M2I9M1I6M2D39M1I10M2I6M1D17M1D12M1D1M2D11M1D10M1I12M1I67M4I21M2D24M2I11M3D18M1I24M1D26M1D11M5D26M1I8M1D2M1D22M1D4M2D25M1D8M1D2M2D33M1D15M4I12M1D22M2I23M2D6M1D4M2D10M1I25M3I5M3I2M1I7M1I22M4I10M3I11M6I4M1I11M1I5M2I4M2I3M1I4M3I ...
written 11 weeks ago by sbdk8230 • updated 11 weeks ago by genomax37k
0
votes
0
answers
304
views
0
answers
Comment: C: Finding conserved non-coding sequences
... You can check this new paper recently published http://www.cell.com/molecular-plant/abstract/S1674-2052(17)30166-1 ...
written 4 months ago by sbdk8230
0
votes
1
answer
414
views
1
answers
Comment: C: Finding Ultraconserved elements between human and zebrafish
... check this new paper http://www.cell.com/molecular-plant/abstract/S1674-2052(17)30166-1 ...
written 4 months ago by sbdk8230

Latest awards to sbdk82

Popular Question 8 months ago, created a question with more than 1,000 views. For Protein Sequence Clustering (CD-HIT vs BLASTClust + Problems in BlastClust)
Great Question 15 months ago, created a question with more than 5,000 views. For Tophat with Bowtie2 long index
Popular Question 15 months ago, created a question with more than 1,000 views. For RNA-Seq analysis and expression level
Popular Question 15 months ago, created a question with more than 1,000 views. For Protein Sequence Clustering (CD-HIT vs BLASTClust + Problems in BlastClust)
Great Question 2.3 years ago, created a question with more than 5,000 views. For Tophat Error : Couldn't build bowtie index with err = 1
Popular Question 2.3 years ago, created a question with more than 1,000 views. For extracting sequence from large fasta file
Popular Question 2.8 years ago, created a question with more than 1,000 views. For Tophat with Bowtie2 long index
Popular Question 2.8 years ago, created a question with more than 1,000 views. For Tophat Error : Couldn't build bowtie index with err = 1
Popular Question 2.8 years ago, created a question with more than 1,000 views. For cufflink and cuffmerge error

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 966 users visited in the last hour