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Samtools: removing PCR duplicates
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updated 2.5 years ago by 44k • written 9.9 years ago by ▴ 40
2
votes
5
replies
2.8k
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Quality of whole genome sequencing and whole exome sequencing
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updated 2.4 years ago by 44k • written 9.7 years ago by ▴ 40
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2
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2.0k
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Can GATK work directly on read and quality score data
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updated 2.4 years ago by 44k • written 9.7 years ago by ▴ 40
2
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4
replies
4.1k
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How to interpret reference homozygous genotype in the VCF file generated by GATK
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updated 2.4 years ago by 44k • written 9.7 years ago by ▴ 40
6
votes
3
replies
6.8k
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How to use Samtools to remove reads whose mate does not map as expected
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updated 2.5 years ago by 44k • written 9.9 years ago by ▴ 40
1
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4
replies
2.2k
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Samtools: remove reads whose mate does not map as expected
next-gen
updated 2.5 years ago by 44k • written 9.9 years ago by ▴ 40
0
votes
7
replies
5.3k
views
Samtools: remove reads that are masked as duplicates
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updated 2.5 years ago by 44k • written 9.9 years ago by ▴ 40
0
votes
2
replies
2.7k
views
Puzzle on size of Bam file
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updated 2.5 years ago by 44k • written 9.9 years ago by ▴ 40
7
votes
19
replies
8.0k
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Extracting reads with low mapping score from Bam file
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updated 2.5 years ago by 44k • written 9.9 years ago by ▴ 40
1
vote
3
replies
1.6k
views
Mapping score in pileup file generated from Samtools
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updated 2.5 years ago by 44k • written 9.9 years ago by ▴ 40
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