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Moderator: EagleEye

gravatar for EagleEye
EagleEye ♦ 6.7k
Reputation:
6,700
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Location:
Sweden
Website:
https://decodebiology....
Twitter:
gridhrahakshi
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Google Scholar Page
Last seen:
1 day, 14 hours ago
Joined:
6 years, 5 months ago
Email:
s***************@gmail.com

Investigating field of biology by applying logics of computer science, statistics and mathematics.

Posts by EagleEye

<prev • 953 results • page 1 of 96 • next >
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Comment: C: GO enrichment: enriched term was not assigned to all genes in functional annotat
... Here is how you can use your custom annotation file with GeneSCF v1.0, https://www.biostars.org/p/150137/#150175 ...
written 10 weeks ago by EagleEye ♦ 6.7k
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Comment: C: GO enrichment: enriched term was not assigned to all genes in functional annotat
... If you have doubts, I would recommend using additional tools to verify the results. Have a look at this tool, https://www.biostars.org/p/108669/ ...
written 10 weeks ago by EagleEye ♦ 6.7k
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Answer: A: for go enrichment analysis which tool do you recommend?
... https://www.biostars.org/p/108669/ ...
written 3 months ago by EagleEye ♦ 6.7k
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Answer: A: Is it possible to use DAVID enrichment with single ranked list of genes?
... Try GeneSCF, https://www.biostars.org/p/108669/ ...
written 6 months ago by EagleEye ♦ 6.7k
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Comment: C: Access to Enrichr
... Try it with a private or incognito browser window. ...
written 6 months ago by EagleEye ♦ 6.7k
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Comment: C: Access to Enrichr
... Follow this link, https://amp.pharm.mssm.edu/Enrichr ...
written 6 months ago by EagleEye ♦ 6.7k
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Answer: A: How to do a GO enrichment analysis for large amount of data using R
... You can do any number of list parallel using [GeneSCF][1]. This tool is specifically designed to handle larger datasets in one go. You can specify the directory where the list of genes are stored (list of text files) and specify the output directory, GeneSCF takes care of the rest. Your output will ...
written 7 months ago by EagleEye ♦ 6.7k
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Comment: C: For multiple testing correction in GO analysis, is it ok to remove GO terms with
... Hi amandastahlke, I have used the p-value cutoff. Just to make it more stringent, I have added one more layer of the cutoff. No rule was applied. ...
written 8 months ago by EagleEye ♦ 6.7k
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Answer: A: Whats best practice for Gene set enrichment analysis?
... Have a look at this simple tool which works with most updated database, https://www.biostars.org/p/108669/ ...
written 11 months ago by EagleEye ♦ 6.7k
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Comment: C: Tools To Find Gene Ontology Term Enrichment
... Dear tarashanst, It looks good. But the point of GO enrichment tools is to reduce the workload from the user's side. If the user has to prepare their own GO term dictionary, what exactly LightGOEA does? Looks like it only matches the user-provided gene list with the user-provided GO terms with asso ...
written 11 months ago by EagleEye ♦ 6.7k

Latest awards to EagleEye

Good Answer 8 weeks ago, created an answer that was upvoted at least 5 times. For A: Clinical Survival data of TCGA
Great Question 3 months ago, created a question with more than 5,000 views. For RNA-seq differential expression analysis, which aligner to choose between BWA/tophat/Bowtie?
Good Answer 4 months ago, created an answer that was upvoted at least 5 times. For A: Clinical Survival data of TCGA
Epic Question 5 months ago, created a question with more than 10,000 views. For RNA-seq differential expression analysis, which aligner to choose between BWA/tophat/Bowtie?
Teacher 6 months ago, created an answer with at least 3 up-votes. For A: How to check the type of identifier from ensembl?
Scholar 13 months ago, created an answer that has been accepted. For A: How to interpret the result of GO analysis using Ontologizer ?
Good Answer 15 months ago, created an answer that was upvoted at least 5 times. For A: Something better than GSEA?
Teacher 17 months ago, created an answer with at least 3 up-votes. For A: How to check the type of identifier from ensembl?
Appreciated 20 months ago, created a post with more than 5 votes. For A: How to check the type of identifier from ensembl?
Scholar 20 months ago, created an answer that has been accepted. For A: How to interpret the result of GO analysis using Ontologizer ?
Good Answer 20 months ago, created an answer that was upvoted at least 5 times. For A: Something better than GSEA?
Teacher 20 months ago, created an answer with at least 3 up-votes. For A: How to check the type of identifier from ensembl?
Scholar 21 months ago, created an answer that has been accepted. For A: How to interpret the result of GO analysis using Ontologizer ?
Commentator 21 months ago, created a comment with at least 3 up-votes. For C: Survey: What colour theme do you use in your terminal?
Teacher 22 months ago, created an answer with at least 3 up-votes. For A: How to check the type of identifier from ensembl?
Popular Question 23 months ago, created a question with more than 1,000 views. For New article on TCGA data & useful resource: Comprehensive Genomic Characterization of Long Non-coding RNAs across Human Cancers
Popular Question 2.0 years ago, created a question with more than 1,000 views. For New article on TCGA data & useful resource: Comprehensive Genomic Characterization of Long Non-coding RNAs across Human Cancers
Popular Question 2.0 years ago, created a question with more than 1,000 views. For New article on TCGA data & useful resource: Comprehensive Genomic Characterization of Long Non-coding RNAs across Human Cancers
Good Answer 2.0 years ago, created an answer that was upvoted at least 5 times. For A: Something better than GSEA?
Popular Question 2.0 years ago, created a question with more than 1,000 views. For New article on TCGA data & useful resource: Comprehensive Genomic Characterization of Long Non-coding RNAs across Human Cancers
Commentator 2.2 years ago, created a comment with at least 3 up-votes. For C: Survey: What colour theme do you use in your terminal?
Appreciated 2.2 years ago, created a post with more than 5 votes. For A: How to check the type of identifier from ensembl?
Good Answer 2.2 years ago, created an answer that was upvoted at least 5 times. For A: Something better than GSEA?
Appreciated 2.2 years ago, created a post with more than 5 votes. For A: How to check the type of identifier from ensembl?
Scholar 2.2 years ago, created an answer that has been accepted. For A: How to interpret the result of GO analysis using Ontologizer ?
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