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Moderator: EagleEye

gravatar for EagleEye
EagleEye ♦ 6.4k
Reputation:
6,360
Status:
Trusted
Location:
Sweden
Website:
https://decodebiology....
Twitter:
gridhrahakshi
Scholar ID:
Google Scholar Page
Last seen:
19 hours ago
Joined:
4 years, 10 months ago
Email:
s***************@gmail.com

Investigating field of biology by applying logics of computer science, statistics and mathematics.

Posts by EagleEye

<prev • 930 results • page 1 of 93 • next >
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Comment: C: Where can I download GO terms and their associated E. coli genes?
... Yes, that will solve the issue. ...
written 28 days ago by EagleEye ♦ 6.4k
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Comment: C: Where can I download GO terms and their associated E. coli genes?
... Are GO characters always 7 digits? **YES** There is a t instead of tab character on my download but I think it should be ok. > **Warning:** Make sure to check system requirements to run GeneSCF. GeneSCF only works on Linux system, it has been successfully tested on > Ubuntu, Mint,Cent OS an ...
written 28 days ago by EagleEye ♦ 6.4k
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Comment: C: Where can I download GO terms and their associated E. coli genes?
... Hi, Glad that GeneSCF was helpful. The downloaded file with '**prepare_database**' format follows these rules, GOID1~GONAME1Gene1,Gene2 GOID2~GONAME2Gene1,Gene2 ...
written 29 days ago by EagleEye ♦ 6.4k
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Answer: A: Where can I download GO terms and their associated E. coli genes?
... Have a look at this posts, https://www.biostars.org/p/72657/#380837 https://www.biostars.org/p/231384/#231579 ...
written 4 weeks ago by EagleEye ♦ 6.4k
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Answer: A: How To Get Gene List From Each Gene Ontology Term?
... Hi, since this thread is live again. Feel like I must also contribute with some updated/easy solution. (Note: Sorry, this is command-line solution) You can retrieve complete list of GO terms with corresponding genes as plan text table format using [GeneSCF][1]'s [prepare_database][2] module. ** ...
written 4 weeks ago by EagleEye ♦ 6.4k
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Answer: A: Tool to perform GSEA on mapped genes
... If you have list of genes, try https://www.biostars.org/p/108669/ ...
written 6 weeks ago by EagleEye ♦ 6.4k
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Comment: C: Retrieve All Genes Associated With A Go Term
... Have you tried '[prepare_database][1]' from [GeneSCF][2]. [1]: https://www.biostars.org/p/191532/#191540 [2]: https://www.biostars.org/p/108669/ ...
written 7 weeks ago by EagleEye ♦ 6.4k
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Comment: C: Publicly available brain tissue (any part) Histone (H3K27me3 and H3K4me3) ChIP-s
... I will have a look :) ...
written 8 weeks ago by EagleEye ♦ 6.4k
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Comment: C: Publicly available brain tissue (any part) Histone (H3K27me3 and H3K4me3) ChIP-s
... Thanks for the information. Looks like SRR2172598 and SRR2172599 are not publicly available (they are protected under dbGAP). Still struggling to get H3K27me3 ChIP-seq. ...
written 8 weeks ago by EagleEye ♦ 6.4k
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Comment: C: Publicly available brain tissue (any part) Histone (H3K27me3 and H3K4me3) ChIP-s
... All those samples are either 36 bp read length or embryo samples (looking for adult brain). Anyway thank for the effort :) ...
written 8 weeks ago by EagleEye ♦ 6.4k

Latest awards to EagleEye

Appreciated 27 days ago, created a post with more than 5 votes. For A: How to check the type of identifier from ensembl?
Scholar 29 days ago, created an answer that has been accepted. For A: How to interpret the result of GO analysis using Ontologizer ?
Good Answer 4 weeks ago, created an answer that was upvoted at least 5 times. For A: Something better than GSEA?
Teacher 6 weeks ago, created an answer with at least 3 up-votes. For A: How to check the type of identifier from ensembl?
Scholar 7 weeks ago, created an answer that has been accepted. For A: How to interpret the result of GO analysis using Ontologizer ?
Commentator 8 weeks ago, created a comment with at least 3 up-votes. For C: Survey: What colour theme do you use in your terminal?
Teacher 11 weeks ago, created an answer with at least 3 up-votes. For A: How to check the type of identifier from ensembl?
Popular Question 3 months ago, created a question with more than 1,000 views. For New article on TCGA data & useful resource: Comprehensive Genomic Characterization of Long Non-coding RNAs across Human Cancers
Popular Question 5 months ago, created a question with more than 1,000 views. For New article on TCGA data & useful resource: Comprehensive Genomic Characterization of Long Non-coding RNAs across Human Cancers
Popular Question 5 months ago, created a question with more than 1,000 views. For New article on TCGA data & useful resource: Comprehensive Genomic Characterization of Long Non-coding RNAs across Human Cancers
Good Answer 5 months ago, created an answer that was upvoted at least 5 times. For A: Something better than GSEA?
Popular Question 5 months ago, created a question with more than 1,000 views. For New article on TCGA data & useful resource: Comprehensive Genomic Characterization of Long Non-coding RNAs across Human Cancers
Commentator 6 months ago, created a comment with at least 3 up-votes. For C: Survey: What colour theme do you use in your terminal?
Appreciated 7 months ago, created a post with more than 5 votes. For A: How to check the type of identifier from ensembl?
Appreciated 7 months ago, created a post with more than 5 votes. For A: How to check the type of identifier from ensembl?
Good Answer 7 months ago, created an answer that was upvoted at least 5 times. For A: Something better than GSEA?
Scholar 7 months ago, created an answer that has been accepted. For A: How to interpret the result of GO analysis using Ontologizer ?
Teacher 9 months ago, created an answer with at least 3 up-votes. For A: How to check the type of identifier from ensembl?
Teacher 11 months ago, created an answer with at least 3 up-votes. For A: How to check the type of identifier from ensembl?
Teacher 11 months ago, created an answer with at least 3 up-votes. For A: How to check the type of identifier from ensembl?
Scholar 11 months ago, created an answer that has been accepted. For A: How to interpret the result of GO analysis using Ontologizer ?
Scholar 11 months ago, created an answer that has been accepted. For A: How to interpret the result of GO analysis using Ontologizer ?
Teacher 11 months ago, created an answer with at least 3 up-votes. For A: How to check the type of identifier from ensembl?
Appreciated 11 months ago, created a post with more than 5 votes. For A: How to check the type of identifier from ensembl?
Appreciated 11 months ago, created a post with more than 5 votes. For A: How to check the type of identifier from ensembl?
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