Moderator: EagleEye
EagleEye ♦ 6.6k
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Investigating field of biology by applying logics of computer science, statistics and mathematics.
Posts by EagleEye
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... Try GeneSCF, https://www.biostars.org/p/108669/ ...
written 5 weeks ago by
EagleEye ♦ 6.6k
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Comment:
C: Access to Enrichr
... Try it with a private or incognito browser window. ...
written 5 weeks ago by
EagleEye ♦ 6.6k
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Comment:
C: Access to Enrichr
... Follow this link, https://amp.pharm.mssm.edu/Enrichr ...
written 5 weeks ago by
EagleEye ♦ 6.6k
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... You can do any number of list parallel using [GeneSCF][1]. This tool is specifically designed to handle larger datasets in one go. You can specify the directory where the list of genes are stored (list of text files) and specify the output directory, GeneSCF takes care of the rest. Your output will ...
written 6 weeks ago by
EagleEye ♦ 6.6k
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... Hi amandastahlke,
I have used the p-value cutoff. Just to make it more stringent, I have added one more layer of the cutoff. No rule was applied. ...
written 3 months ago by
EagleEye ♦ 6.6k
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... Have a look at this simple tool which works with most updated database, https://www.biostars.org/p/108669/
...
written 5 months ago by
EagleEye ♦ 6.6k
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... Dear tarashanst,
It looks good. But the point of GO enrichment tools is to reduce the workload from the user's side. If the user has to prepare their own GO term dictionary, what exactly LightGOEA does? Looks like it only matches the user-provided gene list with the user-provided GO terms with asso ...
written 5 months ago by
EagleEye ♦ 6.6k
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... This tool will give you the terms for all your genes in the list. Additionally it will also provide enrichment analysis.
https://www.biostars.org/p/108669/ ...
written 8 months ago by
EagleEye ♦ 6.6k
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... Since they did not deposit RAW counts, you better reanalyze the FASTQ deposited files if you want to get good results. I had a look at the dataset, it was very interesting. But I have a small question since this is RNA-seq study, I would expect the samples to be collected before a certain time point ...
written 9 months ago by
EagleEye ♦ 6.6k
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Comment:
C: i need to find a database
... in general a web site that gives me the articles that have been released about a locus of the genome?
If you are looking for details about a particular gene locus and its related publications, try GeneCards.
**Example**: https://www.genecards.org/cgi-bin/carddisp.pl?gene=MYCN&keywords=MYCN
...
written 9 months ago by
EagleEye ♦ 6.6k
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