User: EagleEye

gravatar for EagleEye
EagleEye3.4k
Reputation:
3,380
Status:
Trusted
Location:
Sweden
Website:
https://www.researchga...
Twitter:
gridhrahakshi
Scholar ID:
Google Scholar Page
Last seen:
10 hours ago
Joined:
2 years, 7 months ago
Email:
s****************@gu.se

PhD student at University of Gothenburg. Most of my work involves designing or benchmarking pipelines for transcriptome and genomic sequencing data related to epigenetics and cancer.

Posts by EagleEye

<prev • 598 results • page 1 of 60 • next >
0
votes
2
answers
82
views
2
answers
Comment: C: junctions.bed file in hisat2
... I have no idea about reads spanning introns. But I guess you can find explanation in the manual. ...
written 3 days ago by EagleEye3.4k
2
votes
2
answers
82
views
2
answers
Answer: A: junctions.bed file in hisat2
... Easiest solution will be to use [featureCounts][1] and counts reads from exon-exon junctions by providing your aligned BAM files. Check manual [page 35][2] for detailed information. **-J (juncCounts)** Count the number of reads supporting each exon-exon junction. Junctions are identified ...
written 3 days ago by EagleEye3.4k
0
votes
1
answer
79
views
1
answers
Answer: A: List of GO terms that are overrepresented in a geneset
... H o3964fn4ni, [GeneSCF][1] will be the convenient solution for you to test multiple list. But it is command line tool, not web based. For presentation of data check these posts, https://www.biostars.org/p/242652/#242691 [1]: https://www.biostars.org/p/108669/ ...
written 3 days ago by EagleEye3.4k
3
votes
2
answers
167
views
2
answers
Comment: C: Survey: What colour theme do you use in your terminal?
... ![enter image description here][1] [1]: http://bioinformatics.kandurilab.org/biostars/myTerminal.png ...
written 5 days ago by EagleEye3.4k
0
votes
2
answers
640
views
2
answers
Answer: A: blast2go testing for enrichment of GO terms
... Try [GeneSCF][1] v1.0 with your custom annotation file, https://www.biostars.org/p/150137/#150175 [1]: https://www.biostars.org/p/108669/ ...
written 5 days ago by EagleEye3.4k
1
vote
1
answer
141
views
1
answers
Answer: A: Deferentially expressed genes
... Hi, try [GeneSCF][1]. Also check these posts, https://www.biostars.org/p/198414/#198416 https://www.biostars.org/p/235749/#238470 [1]: https://www.biostars.org/p/108669/ ...
written 7 days ago by EagleEye3.4k
0
votes
1
answer
112
views
1
answers
Comment: C: How to extract all the terms using summary?
... Have you tried [GeneSCF][1] ? Which returns all the significant and non-significant terms. Additionally you can also [download complete KEGG][2] terms with corresponding genes as simple text file using GeneSCF. [1]: https://www.biostars.org/p/108669/ [2]: https://www.biostars.org/p/231384/#231 ...
written 12 days ago by EagleEye3.4k
0
votes
1
answer
95
views
1
answers
Answer: A: How to get the gene function based on GO id?
... https://www.biostars.org/p/241638/#241647 ...
written 12 days ago by EagleEye3.4k
1
vote
2
answers
101
views
2
answers
Answer: A: finding a list of genes involved in a pathway?
... Try [GeneSCF][1], https://www.biostars.org/p/191532/#191540 https://www.biostars.org/p/231384/#231579 [1]: https://www.biostars.org/p/108669/ ...
written 13 days ago by EagleEye3.4k
0
votes
1
answer
113
views
1
answers
Comment: C: localhost doesn't work
... You might get quicker response in https://biostar.usegalaxy.org ...
written 22 days ago by EagleEye3.4k

Latest awards to EagleEye

Scholar 3 days ago, created an answer that has been accepted. For A: How to interpret the result of GO analysis using Ontologizer ?
Commentator 5 days ago, created a comment with at least 3 up-votes. For C: Survey: What colour theme do you use in your terminal?
Scholar 25 days ago, created an answer that has been accepted. For A: How to interpret the result of GO analysis using Ontologizer ?
Teacher 29 days ago, created an answer with at least 3 up-votes. For A: Clinical Survival data of TCGA
Teacher 4 weeks ago, created an answer with at least 3 up-votes. For A: Clinical Survival data of TCGA
Scholar 5 weeks ago, created an answer that has been accepted. For A: How to get all disease-causing genes from OMIM?
Teacher 5 weeks ago, created an answer with at least 3 up-votes. For A: How to get all disease-causing genes from OMIM?
Teacher 6 weeks ago, created an answer with at least 3 up-votes. For A: How to get all disease-causing genes from OMIM?
Scholar 6 weeks ago, created an answer that has been accepted. For A: How to get all disease-causing genes from OMIM?
Teacher 6 weeks ago, created an answer with at least 3 up-votes. For A: How to get all disease-causing genes from OMIM?
Teacher 7 weeks ago, created an answer with at least 3 up-votes. For A: How to get all disease-causing genes from OMIM?
Teacher 8 weeks ago, created an answer with at least 3 up-votes. For A: How to get all disease-causing genes from OMIM?
Teacher 8 weeks ago, created an answer with at least 3 up-votes. For A: How to get all disease-causing genes from OMIM?
Scholar 8 weeks ago, created an answer that has been accepted. For A: How to get all disease-causing genes from OMIM?
Scholar 9 weeks ago, created an answer that has been accepted. For A: How to get all disease-causing genes from OMIM?
Scholar 9 weeks ago, created an answer that has been accepted. For A: How to get all disease-causing genes from OMIM?
Appreciated 9 weeks ago, created a post with more than 5 votes. For A: How to check the type of identifier from ensembl?
Teacher 9 weeks ago, created an answer with at least 3 up-votes. For A: How to get all disease-causing genes from OMIM?
Teacher 10 weeks ago, created an answer with at least 3 up-votes. For A: How to get all disease-causing genes from OMIM?
Librarian 11 weeks ago, created a post with more than 10 bookmarks. For Gene Set Clustering based on Functional annotation (GeneSCF)
Teacher 11 weeks ago, created an answer with at least 3 up-votes. For A: How to get all disease-causing genes from OMIM?
Great Question 3 months ago, created a question with more than 5,000 views. For Gene Set Clustering based on Functional annotation (GeneSCF)
Great Question 5 months ago, created a question with more than 5,000 views. For Gene Set Clustering based on Functional annotation (GeneSCF)
Prophet 5 months ago, created a post with more than 20 followers. For Gene Set Clustering based on Functional annotation (GeneSCF)

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 511 users visited in the last hour