Moderator: EagleEye

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EagleEye6.6k
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https://decodebiology....
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gridhrahakshi
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Investigating field of biology by applying logics of computer science, statistics and mathematics.

Posts by EagleEye

<prev • 950 results • page 1 of 95 • next >
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Answer: A: Is it possible to use DAVID enrichment with single ranked list of genes?
... Try GeneSCF, https://www.biostars.org/p/108669/ ...
written 5 weeks ago by EagleEye6.6k
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Comment: C: Access to Enrichr
... Try it with a private or incognito browser window. ...
written 5 weeks ago by EagleEye6.6k
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Comment: C: Access to Enrichr
... Follow this link, https://amp.pharm.mssm.edu/Enrichr ...
written 5 weeks ago by EagleEye6.6k
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Answer: A: How to do a GO enrichment analysis for large amount of data using R
... You can do any number of list parallel using [GeneSCF][1]. This tool is specifically designed to handle larger datasets in one go. You can specify the directory where the list of genes are stored (list of text files) and specify the output directory, GeneSCF takes care of the rest. Your output will ...
written 6 weeks ago by EagleEye6.6k
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Comment: C: For multiple testing correction in GO analysis, is it ok to remove GO terms with
... Hi amandastahlke, I have used the p-value cutoff. Just to make it more stringent, I have added one more layer of the cutoff. No rule was applied. ...
written 3 months ago by EagleEye6.6k
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Answer: A: Whats best practice for Gene set enrichment analysis?
... Have a look at this simple tool which works with most updated database, https://www.biostars.org/p/108669/ ...
written 5 months ago by EagleEye6.6k
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Comment: C: Tools To Find Gene Ontology Term Enrichment
... Dear tarashanst, It looks good. But the point of GO enrichment tools is to reduce the workload from the user's side. If the user has to prepare their own GO term dictionary, what exactly LightGOEA does? Looks like it only matches the user-provided gene list with the user-provided GO terms with asso ...
written 5 months ago by EagleEye6.6k
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Comment: C: GO terms associated to a list of genes
... This tool will give you the terms for all your genes in the list. Additionally it will also provide enrichment analysis. https://www.biostars.org/p/108669/ ...
written 8 months ago by EagleEye6.6k
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Comment: C: Analyzing LogRPKM Counts Data for finding DEGs(Differential Expressed Genes)
... Since they did not deposit RAW counts, you better reanalyze the FASTQ deposited files if you want to get good results. I had a look at the dataset, it was very interesting. But I have a small question since this is RNA-seq study, I would expect the samples to be collected before a certain time point ...
written 9 months ago by EagleEye6.6k
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Comment: C: i need to find a database
... in general a web site that gives me the articles that have been released about a locus of the genome? If you are looking for details about a particular gene locus and its related publications, try GeneCards. **Example**: https://www.genecards.org/cgi-bin/carddisp.pl?gene=MYCN&keywords=MYCN ...
written 9 months ago by EagleEye6.6k

Latest awards to EagleEye

Teacher 21 days ago, created an answer with at least 3 up-votes. For A: How to check the type of identifier from ensembl?
Scholar 8 months ago, created an answer that has been accepted. For A: How to interpret the result of GO analysis using Ontologizer ?
Good Answer 9 months ago, created an answer that was upvoted at least 5 times. For A: Something better than GSEA?
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Appreciated 14 months ago, created a post with more than 5 votes. For A: How to check the type of identifier from ensembl?
Scholar 14 months ago, created an answer that has been accepted. For A: How to interpret the result of GO analysis using Ontologizer ?
Good Answer 14 months ago, created an answer that was upvoted at least 5 times. For A: Something better than GSEA?
Teacher 15 months ago, created an answer with at least 3 up-votes. For A: How to check the type of identifier from ensembl?
Scholar 15 months ago, created an answer that has been accepted. For A: How to interpret the result of GO analysis using Ontologizer ?
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Teacher 16 months ago, created an answer with at least 3 up-votes. For A: How to check the type of identifier from ensembl?
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Appreciated 20 months ago, created a post with more than 5 votes. For A: How to check the type of identifier from ensembl?
Appreciated 21 months ago, created a post with more than 5 votes. For A: How to check the type of identifier from ensembl?
Good Answer 21 months ago, created an answer that was upvoted at least 5 times. For A: Something better than GSEA?
Scholar 21 months ago, created an answer that has been accepted. For A: How to interpret the result of GO analysis using Ontologizer ?
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Scholar 2.1 years ago, created an answer that has been accepted. For A: How to interpret the result of GO analysis using Ontologizer ?

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