User: EagleEye

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EagleEye3.9k
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Sweden
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https://www.researchga...
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gridhrahakshi
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45 minutes ago
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2 years, 9 months ago
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Investigating field of biology by applying logics of computer science, statistics and mathematics.

Posts by EagleEye

<prev • 650 results • page 1 of 65 • next >
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Comment: C: GO enrichment analysis with human ENSEMBL ids
... That's the reason to avoid confusion I asked you to use GTF/GFF3 to convert your ENSGs to Gene Symbols. ...
written 1 hour ago by EagleEye3.9k
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Comment: C: GO enrichment analysis with human ENSEMBL ids
... Hi, If you got Gene Symbols (HGNC), use [GeneSCF][1] to get complete annotation for all your input genes. All ENSGs (Ensembl Genes) will have corresponding Gene Symbol (you can find in [GTF or GFF3 from Ensembl][2]). To avoid this problem I personally prefer to use only Ensembl IDs and Gene Symbols ...
written 5 hours ago by EagleEye3.9k
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Answer: C: How to caculate the log2foldchange?
... Drought1: Log2(10.990/31.975) Drought2: log2(6.600/31.975) Drought1 vs Drought2: abs(log2(6.600/10.990)) ABS = Absolute value (you can find this function in R, Matlab and also in Excel) **Note: In Excel the equation goes like this,** `ABS(Log(6.600/10.990,2))` ...
written 6 hours ago by EagleEye3.9k
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Answer: A: Converting gene ids to each other
... Ensembl BioMart: http://www.ensembl.org/biomart/martview/b49498a07e451f4399e3bbb5945e3594 ...
written 2 days ago by EagleEye3.9k
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Answer: A: How to find novel gene/isoform in 1 RNA-SEQ sample?
... Checkout these posts https://www.biostars.org/p/200725/ https://www.biostars.org/p/190734/#190802 https://www.biostars.org/p/200963/#200965 https://www.biostars.org/p/243692/#253916 ...
written 3 days ago by EagleEye3.9k
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Answer: A: Annotation Of Genomic Regions
... http://homer.ucsd.edu/homer/ngs/annotation.html http://bejerano.stanford.edu/great/public/html/ ...
written 3 days ago by EagleEye3.9k
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Comment: C: Grep Position List
... Hi, Use same command (without -w) by including YOUR_POSITION in 'Position.txt' file. This might work. Example to add tabs: sed -i 's/^/\t/' Position.txt sed -i 's/$/\t/' Position.txt ...
written 3 days ago by EagleEye3.9k
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Comment: C: Phred score check for BAM files
... Hi [Shicheng Guo][1], what is the main purpose of this code ? In what kind of situation, this can be used. I assume this can be only used if you want to realign BAM (alignment) file. [1]: https://www.biostars.org/u/19400/ ...
written 4 days ago by EagleEye3.9k
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Answer: A: Heatmap - with diagonally split tiles
... Did you have a look at corrplot ? https://cran.r-project.org/web/packages/corrplot/vignettes/corrplot-intro.html Try method "pie" and make 50-50% division and have two colors in single cell with two different categories. ...
written 4 days ago by EagleEye3.9k
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Comment: C: Phred score check for BAM files
... I am wondering, isn't this step (know the scoring method) necessary before aligning the reads/alignment ? Since some aligners expect us to provide this information. ...
written 4 days ago by EagleEye3.9k

Latest awards to EagleEye

Teacher 1 day ago, created an answer with at least 3 up-votes. For A: Clinical Survival data of TCGA
Teacher 5 days ago, created an answer with at least 3 up-votes. For A: Clinical Survival data of TCGA
Good Answer 5 days ago, created an answer that was upvoted at least 5 times. For A: Something better than GSEA?
Scholar 6 days ago, created an answer that has been accepted. For A: How to interpret the result of GO analysis using Ontologizer ?
Appreciated 11 days ago, created a post with more than 5 votes. For A: How to check the type of identifier from ensembl?
Teacher 12 days ago, created an answer with at least 3 up-votes. For A: Clinical Survival data of TCGA
Appreciated 17 days ago, created a post with more than 5 votes. For A: How to check the type of identifier from ensembl?
Teacher 17 days ago, created an answer with at least 3 up-votes. For A: Clinical Survival data of TCGA
Appreciated 23 days ago, created a post with more than 5 votes. For A: How to check the type of identifier from ensembl?
Teacher 24 days ago, created an answer with at least 3 up-votes. For A: Clinical Survival data of TCGA
Teacher 5 weeks ago, created an answer with at least 3 up-votes. For A: Clinical Survival data of TCGA
Scholar 5 weeks ago, created an answer that has been accepted. For A: How to interpret the result of GO analysis using Ontologizer ?
Teacher 5 weeks ago, created an answer with at least 3 up-votes. For A: Clinical Survival data of TCGA
Scholar 6 weeks ago, created an answer that has been accepted. For A: How to interpret the result of GO analysis using Ontologizer ?
Scholar 9 weeks ago, created an answer that has been accepted. For A: How to interpret the result of GO analysis using Ontologizer ?
Commentator 9 weeks ago, created a comment with at least 3 up-votes. For C: Survey: What colour theme do you use in your terminal?
Scholar 12 weeks ago, created an answer that has been accepted. For A: How to interpret the result of GO analysis using Ontologizer ?
Teacher 3 months ago, created an answer with at least 3 up-votes. For A: Clinical Survival data of TCGA
Teacher 3 months ago, created an answer with at least 3 up-votes. For A: Clinical Survival data of TCGA
Scholar 3 months ago, created an answer that has been accepted. For A: How to get all disease-causing genes from OMIM?
Teacher 3 months ago, created an answer with at least 3 up-votes. For A: How to get all disease-causing genes from OMIM?
Teacher 3 months ago, created an answer with at least 3 up-votes. For A: How to get all disease-causing genes from OMIM?
Scholar 3 months ago, created an answer that has been accepted. For A: How to get all disease-causing genes from OMIM?
Teacher 3 months ago, created an answer with at least 3 up-votes. For A: How to get all disease-causing genes from OMIM?
Teacher 3 months ago, created an answer with at least 3 up-votes. For A: How to get all disease-causing genes from OMIM?

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