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0
votes
0
replies
5.6k
views
Comment:
Comment: Gene length table from gtf file for rpkm() function
2.3 years ago by
EagleEye
7.6k
3
votes
1
reply
2.2k
views
Answer:
Answer: How to plot UMAP for control vs treatment scRNA seq samples which will depict cl
2.7 years ago by
EagleEye
7.6k
0
votes
0
replies
683
views
Answer:
Answer: Long non coding RNA seq analysis pipeline
2.7 years ago by
EagleEye
7.6k
0
votes
0
replies
1.5k
views
Answer:
Answer: updated GO dataframe in R
2.7 years ago by
EagleEye
7.6k
1
vote
0
replies
2.2k
views
Answer:
Answer: Is there any way to group GO term (biological process) based on close functional
2.8 years ago by
EagleEye
7.6k
0
votes
1
reply
1.2k
views
Answer:
Answer: Suggestions for automated functional analysis of transcripts
2.9 years ago by
EagleEye
7.6k
0
votes
0
replies
1.1k
views
Answer:
Answer: Given set of genomic sequences find potentially enriched genes?
3.1 years ago by
EagleEye
7.6k
0
votes
0
replies
1.1k
views
Answer:
Answer: How to do gene enrichment with locally stored KEGG & Reactome data in R
3.1 years ago by
EagleEye
7.6k
0
votes
0
replies
1.1k
views
Answer:
Answer: Where to store large files?
3.2 years ago by
EagleEye
7.6k
0
votes
1
reply
3.4k
views
Comment:
Comment: Remove contamination across cell clusters
3.2 years ago by
EagleEye
7.6k
0
votes
0
replies
3.8k
views
Comment:
Comment: Enrichr input genes, up, down, or both at once
3.2 years ago by
EagleEye
7.6k
0
votes
0
replies
2.3k
views
Comment:
Comment: Batch effect removal
3.2 years ago by
EagleEye
7.6k
0
votes
0
replies
39k
views
Comment:
Comment: How to embed known cell information into Seurat object? AddMetaData?
3.4 years ago by
EagleEye
7.6k
2
votes
1
reply
39k
views
Comment:
Comment: How to embed known cell information into Seurat object? AddMetaData?
3.4 years ago by
EagleEye
7.6k
0
votes
0
replies
887
views
Comment:
Comment: Is geneontology.org down?
3.4 years ago by
EagleEye
7.6k
1
vote
2
replies
887
views
Is geneontology.org down?
database
geneontology
3.4 years ago by
EagleEye
7.6k
0
votes
1
reply
27k
views
Comment:
Comment: Gene Set Enrichment Analysis
3.5 years ago by
EagleEye
7.6k
0
votes
0
replies
5.7k
views
Comment:
Comment: Where to get Gene start position to end positon for all gene in an organism
3.5 years ago by
EagleEye
7.6k
5
votes
0
replies
1.2k
views
Answer:
Answer: Locating a single cell data set
3.5 years ago by
EagleEye
7.6k
2
votes
0
replies
1.2k
views
Comment:
Comment: Locating a single cell data set
3.5 years ago by
EagleEye
7.6k
0
votes
0
replies
1.7k
views
Comment:
Comment: Clarification regarding VCF fields (file format)
3.5 years ago by
EagleEye
7.6k
3
votes
7
replies
1.7k
views
Clarification regarding VCF fields (file format)
mutation
VCF
SNPs
format
updated 3.5 years ago by
Arsenal
▴ 160 • written 3.5 years ago by
EagleEye
7.6k
1
vote
1
reply
1.4k
views
Answer:
Answer: Looking for both RNA-Seq and Single Cell RNA-Seq data collected from the the sam
3.6 years ago by
EagleEye
7.6k
0
votes
0
replies
1.5k
views
Answer:
Answer: Group Genes by Protein Coding/Non-coding feature
3.6 years ago by
EagleEye
7.6k
0
votes
0
replies
1.2k
views
Comment:
Comment: How can I get three letter organism code for cavia porcellus?
3.6 years ago by
EagleEye
7.6k
0
votes
0
replies
1.3k
views
Answer:
Answer: quering publicaly available data sets of RNA-seq and constructing a Kaplan Meie
3.6 years ago by
EagleEye
7.6k
0
votes
0
replies
744
views
Job:
Postdoctoral fellow (computational) in Long non-coding RNA (IncRNA) and cancer biology
computational-biology
updated 3.4 years ago by
Ram
44k • written 3.6 years ago by
EagleEye
7.6k
1
vote
1
reply
2.2k
views
Comment:
Comment: FeatureCounts total alignment = 0. an you help me please
3.6 years ago by
EagleEye
7.6k
0
votes
0
replies
1.1k
views
Answer:
Answer: Bioinformatics researcher looking for an answer on edgeR and DESeq2
3.6 years ago by
EagleEye
7.6k
1
vote
0
replies
1.3k
views
Answer:
Answer: problem with SNPs and Indels detectiong useng WGS data
3.7 years ago by
EagleEye
7.6k
0
votes
0
replies
3.6k
views
Comment:
C: How to perform the lncRNA enrichment analysis?
3.7 years ago by
EagleEye
7.6k
0
votes
0
replies
1.4k
views
Comment:
C: RNA-SEQ data, reads count zero
3.7 years ago by
EagleEye
7.6k
0
votes
1
reply
2.4k
views
Answer:
A: Problems specifying data.type and sample.type in TCGAbiolinks GDCquery
3.7 years ago by
EagleEye
7.6k
0
votes
2
replies
1.4k
views
Answer:
A: RNA-SEQ data, reads count zero
3.7 years ago by
EagleEye
7.6k
0
votes
1
reply
868
views
Comment:
C: tools for single cell alternative splicing
3.8 years ago by
EagleEye
7.6k
0
votes
0
replies
1.5k
views
Comment:
C: Forward and reverse single cell data analysis
3.8 years ago by
EagleEye
7.6k
0
votes
2
replies
1.5k
views
Comment:
C: Forward and reverse single cell data analysis
3.8 years ago by
EagleEye
7.6k
0
votes
0
replies
1.7k
views
Answer:
A: Where can I find data about gene expression in such deseases as bipolar (maniaca
3.8 years ago by
EagleEye
7.6k
0
votes
0
replies
925
views
Answer:
A: lncRNA identification from RNAseq data
3.8 years ago by
EagleEye
7.6k
1
vote
1
reply
2.9k
views
Comment:
C: differential expression- coding genes
3.8 years ago by
EagleEye
7.6k
0
votes
1
reply
1.4k
views
Comment:
C: How to check wether Chip-seq worked or not
3.8 years ago by
EagleEye
7.6k
3
votes
1
reply
2.9k
views
Comment:
C: differential expression- coding genes
3.8 years ago by
EagleEye
7.6k
3
votes
1
reply
2.9k
views
Answer:
C: differential expression- coding genes
3.8 years ago by
EagleEye
7.6k
2
votes
1
reply
1.4k
views
Answer:
A: How to check wether Chip-seq worked or not
3.8 years ago by
EagleEye
7.6k
0
votes
0
replies
3.3k
views
Answer:
A: List of TCGA genes differentially expressed in normal versus tumor
3.8 years ago by
EagleEye
7.6k
0
votes
1
reply
1.5k
views
Comment:
C: GO enrichment: enriched term was not assigned to all genes in functional annotat
4.1 years ago by
EagleEye
7.6k
0
votes
1
reply
1.5k
views
Comment:
C: GO enrichment: enriched term was not assigned to all genes in functional annotat
4.1 years ago by
EagleEye
7.6k
58
votes
52
replies
53k
views
12 follow
Tool:
Gene Set Clustering based on Functional annotation (GeneSCF)
geneSCF
Gene-Clustering
updated 17 months ago by
Ram
44k • written 10.3 years ago by
EagleEye
7.6k
5
votes
2
replies
4.9k
views
News:
GeneSCF (Gene Enrichment Tool): Advice to users
kegg
GeneSCF
GO
annotation
updated 22 months ago by
Ram
44k • written 7.9 years ago by
EagleEye
7.6k
1
vote
0
replies
8.4k
views
Answer:
A: for go enrichment analysis which tool do you recommend?
4.2 years ago by
EagleEye
7.6k
972 results • Page
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