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646
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Comment: Comment: Reference Genome with decoy for RNAseq data processing
6 months ago by rfran010 ★ 1.6k
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0
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544
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Comment: Comment: Read groups RNA-seq and hisat2
6 months ago by rfran010 ★ 1.6k
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0
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805
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Answer: Answer: Repetitive sequences analysis
6 months ago by rfran010 ★ 1.6k
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0
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556
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Answer: Answer: Motif enrichment across super-enhancer regions
7 months ago by rfran010 ★ 1.6k
1
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1
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1.1k
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Comment: Comment: Strange offsetting in deeptools?
8 months ago by rfran010 ★ 1.6k
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1
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1.1k
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Answer: Answer: Strange offsetting in deeptools?
8 months ago by rfran010 ★ 1.6k
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1
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2.0k
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Comment: Comment: DESeq2: error in checkFullRank(modelMatrix)
8 months ago by rfran010 ★ 1.6k
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0
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617
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Comment: Comment: SCRNA calculate the average expression
8 months ago by rfran010 ★ 1.6k
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0
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677
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Comment: Comment: Merge paired end reads after mapping in BAM files
8 months ago by rfran010 ★ 1.6k
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0
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426
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Comment: Comment: scRNA-seq analysis after overexpressing a specific gene
8 months ago by rfran010 ★ 1.6k
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1
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617
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Comment: Comment: SCRNA calculate the average expression
8 months ago by rfran010 ★ 1.6k
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1
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2.0k
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Comment: Comment: Mouse genome featureCounts
8 months ago by rfran010 ★ 1.6k
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0
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741
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Answer: Answer: WIG files - bulk RNA-seq
8 months ago by rfran010 ★ 1.6k
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1
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2.0k
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Comment: Comment: Mouse_genome_featureCounts
8 months ago by rfran010 ★ 1.6k
1
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0
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2.0k
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Comment: Comment: Mouse_genome_featureCounts
8 months ago by rfran010 ★ 1.6k
0
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0
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827
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Comment: Comment: RPKM value interpretation
9 months ago by rfran010 ★ 1.6k
1
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1
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2.6k
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Comment: Comment: dedup STAR transcriptome file using umi_tools
10 months ago by rfran010 ★ 1.6k
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1
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2.6k
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Comment: Comment: Question about edgeR p-values/FDR values
10 months ago by rfran010 ★ 1.6k
0
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0
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684
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Comment: Comment: all genes have negative logFC edgeR
11 months ago by rfran010 ★ 1.6k
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0
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1.7k
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Comment: Comment: Differential gene expression (aiming to create heatmap) for raw RNAseq count dat
13 months ago by rfran010 ★ 1.6k
0
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1
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1.7k
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Comment: Comment: Differential gene expression (aiming to create heatmap) for raw RNAseq count dat
13 months ago by rfran010 ★ 1.6k
1
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1
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1.3k
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Comment: Comment: call peak for all replicates in all conditions using macs2
13 months ago by rfran010 ★ 1.6k
0
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1
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970
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Comment: Comment: trimming 151bp to shorter k-mer in ATAC-seq analysis
13 months ago by rfran010 ★ 1.6k
0
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0
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959
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Comment: Comment: flipped BAM files in IGV after STAR aligner
13 months ago by rfran010 ★ 1.6k
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0
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2.6k
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Comment: Comment: Submitting a job in parallel on slurm
13 months ago by rfran010 ★ 1.6k
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1
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2.6k
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Comment: Comment: Submitting a job in parallel on slurm
13 months ago by rfran010 ★ 1.6k
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0
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2.6k
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Comment: Comment: Submitting a job in parallel on slurm
13 months ago by rfran010 ★ 1.6k
0
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2
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2.6k
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Comment: Comment: Submitting a job in parallel on slurm
13 months ago by rfran010 ★ 1.6k
0
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0
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2.6k
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Comment: Comment: Submitting a job in parallel on slurm
13 months ago by rfran010 ★ 1.6k
0
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1
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2.6k
views
Comment: Comment: Submitting a job in parallel on slurm
13 months ago by rfran010 ★ 1.6k
0
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1
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689
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Comment: Comment: Change of cell proportions or differential expression?
13 months ago by rfran010 ★ 1.6k
0
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3
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2.6k
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Answer: Answer: Submitting a job in parallel on slurm
13 months ago by rfran010 ★ 1.6k
0
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0
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555
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Answer: Answer: How To Get Millions of Sequences from Genomic Regions Efficiently
13 months ago by rfran010 ★ 1.6k
1
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0
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584
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Answer: Answer: quary relted to ChIPpeakAnno & VennDiagram
13 months ago by rfran010 ★ 1.6k
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1
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1.8k
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Comment: Comment: Weird insert size distribution plot
13 months ago by rfran010 ★ 1.6k
0
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1
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1.3k
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Answer: Answer: Should the amount of DNA input used for ChIP-seq library preparation be matched
13 months ago by rfran010 ★ 1.6k
0
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0
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1.6k
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Comment: Comment: featureCounts output
13 months ago by rfran010 ★ 1.6k
1
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1
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1.2k
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Answer: Answer: Merging two sequencing datasets
13 months ago by rfran010 ★ 1.6k
1
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0
replies
1.8k
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Comment: Comment: How to check if all read names are paired properly in paired end fastq.gz files?
13 months ago by rfran010 ★ 1.6k
0
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1
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900
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Comment: Comment: high no_feature in htseq
13 months ago by rfran010 ★ 1.6k
0
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1
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900
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Comment: Comment: high no_feature in htseq
13 months ago by rfran010 ★ 1.6k
1
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1
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1.6k
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Comment: Comment: featureCounts output
14 months ago by rfran010 ★ 1.6k
1
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2
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1.6k
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Answer: Answer: featureCounts output
14 months ago by rfran010 ★ 1.6k
0
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0
replies
1.2k
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Comment: Comment: Same sample and reference genome, different number of reads
14 months ago by rfran010 ★ 1.6k
1
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1
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1.2k
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Comment: Comment: Same sample and reference genome, different number of reads
14 months ago by rfran010 ★ 1.6k
0
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0
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945
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Answer: Answer: Determining library prep: rRNA depletion or mRNA enrichment
14 months ago by rfran010 ★ 1.6k
1
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0
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1.4k
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Comment: Comment: Low "assigned alignments" in output and high "Unassigned_NoFeatures" in summary
14 months ago by rfran010 ★ 1.6k
0
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0
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1.9k
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Comment: Comment: bam is in a format that cannot be usefully indexed
14 months ago by rfran010 ★ 1.6k
0
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0
replies
754
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Comment: Comment: High Amount of UnAssignedNoFeatures in FeatureCounts Output
14 months ago by rfran010 ★ 1.6k
0
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2
replies
1.9k
views
Answer: Answer: bam is in a format that cannot be usefully indexed
14 months ago by rfran010 ★ 1.6k
310 results • Page 2 of 7
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